Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3221 |
Symbol | |
ID | 3971943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3567784 |
End bp | 3570990 |
Gene Length | 3207 bp |
Protein Length | 1068 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637926331 |
Product | acriflavin resistance protein |
Protein accession | YP_533082 |
Protein GI | 90424712 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.889308 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAAGCTCG GACTCTCGGG ACGTCTCACC CAAGCCACCA TCGGCTCGCC GCTGACGCCG CTGTTTCTGC TTGCGGCCCT GATCGTCGGG CTGTTCGCGC TCGCTGCGAT CCCGCGCGAG GAGGAACCGC AGATCAGCGT GCCGATGGTC GACATCCGCG TCAACGCCGA CGGCCTGCGG GCGCCGGACG CCGTCGAACT CGTCACCAAG CCGCTGGAAG CCATCGTCAA GAGCATCGAC GGCATCGAGC ACGTCTACAG CCAGACCGAA GACGACCGCG TCATGGTCAC CGCGCGGTTT TTGGTCGGCA CCAAATCCGA GGACGCCATC CTGCGCGTCC ACGAAAAGAT CCGCGCCAAT CTCGACCGCA TTCCGGTCGG CATCGCCGAG CCCTTGATCG TCGGCCGCGG CATCAACGAC GTCGCGGTCA GCGTGCTGAC GTTGTCGCCG AAGCCCGAGG CGGCGGCGCG CTGGACCGAC AAGGACCTGT TCGAACTCGC CGACAAACTG CGCTCGGAAC TGATGAAGGT CGACAGCATC GGGCTGACTT ACATCTCCGG CGGCGGCGCG CAGCAGATCC GGGTCGAGCC CGATCCGGAA AAGCTGTCGC TGTTCGGCGT CACGCTGCAG CAACTGGTCG CCAAGGTGAA GGACGCCAAC CGCTCGTTTC TGGCGGGTTC GGTCCGCGAC GCCGGCCTGG TGCGCAGCGT CTCCGCCGGC CAGACACTAT CCGGGGTTCC GGATATCGGC CTGTTGCTGA TCTCGACCCG CGACGATCGT CCGGTCTATG TCAAAGACGT AGCTTCGGTG GTGATCGGCC CCAATGCCAG CGAGCATCGG GTGTGGAGCG AGGCCCGCGA CGGCAACGGC GATTGGCAGC GTGTGCCTGC GGTCAGCCTG GCGCTGGCCA AGCGCGCCGG CGCCAACGCC GTGGTGGTGT CGCAGGCGAT CGCCGAGCGG CTCGAAGGCT TGAAGGCGCG GCTGATCCCG GACGACGTCG TCGTCACGGT CACGCGCGAC TATGGCGAGA CCGCCAACGA CAAGGCCAAC GAGCTGCTGC TGCATCTCGG CATCGCCACG ATTTCGATCG TAGTGCTGAT CGGCTTTGCG ATCGGTTGGC GCGAGGCGCT GGTCACCCTC GTGGTGATCC CGACCACGAT TCTGCTGACG CTGTTCGCCG CCAATCTGAT GGGCTACACC ATCAACCGCG TCAGCCTGTT CGCGCTGATC TTCTCGATCG GCATTTTGGT CGACGACGCG ATTGTTGTCG TGGAAAACAT CGCGCGGCAT TGGGCGATGC AAGACGGCCG GCCGCGGCTG CAGGCGACCA TCGAAGCGGT CGCCGAAGTC GGCAATCCCA CGGTGATCGC CACGCTGACC GTGGTCGCGG CGCTGCTGCC GATGCTGTTC GTGTCGGGAC TGATGGGTCC CTATATGGCG CCGATCCCCG CCAATGCCTC CGCGGCGATG CTGTTCTCGT TCTTCGTCGC CATGGTGGTG GCGCCGTGGC TGATGCTGCG GCTGGCGCCG CGCGAGGGCG CCGTCGTCGC CGGACATGAC GCGCATGACG AAGGCCGGCT GGGGCGGCTG TATCGCCGTA TCGCCACACC GATCATCGCC AGCAAACGCT CGGCCTGGAT CTTTCTGCTC GGCGTCGGTC TGGCCACGCT GGCCTCGATG GCGCTGTTCG CCACCAAATC GGTGACGGTG AAGCTGTTGC CGTTCGATAA CAAATCCGAG ATCGCCGTGA TGGTCGATCT GCCGGAAGGC GCCAGCCTCG AGGCCACCGA GCGCGTGCTG TTCGCCGCTG CGCAAATCGC GCGCGGACTG CCGGAAATCA GTTCGGTGCA GAGCTACGCC GGCACGCCGG CGCCGTTCAA CTTCAACGGC TTGGTGCGGC ATTATTACTT GCGCGAGCGG CCCGAGCTCG GCGAGCTGCA GGTCAATCTC GCCGGCCGCG AGCATCGCGC CCGCGCCAGC CACGCCATCG CGCTGGATCT GCGCGAGCGG CTGAAGGCGG TGTCCGTACC CGCCGGCACC AGCATCAAGG TCGTCGAAGT GCCGCCGGGG CCGCCGGTGC TGTCGACGCT GCTGGCCGAA ATCTACGGGC CGGACGCCGC CACCCGCCGC GCCGTCGCCC TGGAGATGAA GAAGCTATTC GCCGAAGTGC CGTTCATCGT CGATATCGAC GATTCGATCG GCGAAAAGCG GCCGCGGCTG CGGCTGTCGA TCGATCAGGA CCGGCTGGAA TTCTTCGGGG TCGAGCAGCG CGACGTCTAT GACACCATCG CCACGTTGTT CGGCGGCGTT TCGGTCGGCT ACTCGCATCG CGGCGAGGAT CGCAACCCGA TCGAGATCGC GGTGCGGCTG CCGAAGCGCG ATCTGGCCTG GACCGAGGCC TTGGCGTCGA CGCCGGTGCC GGCCAACACG CTGCCCGGAG CCAAAACCGT GGTCGAACTC GGGCAGCTGG TGAAGGCCAG CATGGAGCAG GGCTCGCCGA TGCTGTTCCG CCGCGACGGC CGCTTCGCCG ACATGGTGAT GGCGGAGCTG GCGGGGCGCT TCGAGGCGCC GCTGTACGGC ATGTTCGCGG TGGCGGACAA GATCGACGCG CATGATTGGG GGACGTTGCC GAAGCCCGCG ATCGCCATGC ATGGCCAGCC GGCCGACGAG TCCAAGCCGA CGCTACTATG GGACGGCGAG TGGGAGATCA CTTACGTCAC CTTCCGCGAC ATGGGGGCGG CGTTCGGCGC GGCGATCCTC GGCATCTACG TGCTGGTGGT GGCGCAGTTT CGCAGCTTCA AGCTGCCGCT GGTGATCCTG ACGCCGATCC CGTTGACGCT GATCGGCATC TTGATCGGGC ACTGGCTGCT CGGCGCGGCC TTCACCGCGA CCTCGATGAT CGGCTTCATC GCGCTGGCCG GCATCATCGT TCGTAACTCG ATCCTGCTGG TGGATTTCAT CCGCCACAGC GGCGGGCAGG GCAAAACCGT GCGCGAGGTG GTGTTGCAGG CCGGTGCGGT GCGCTTCAAG CCGATCCTGT TGACCGCGCT CGCCGCGATG ATCGGCGCCG CCACTATCCT GCTCGACCCG ATCTTTCAGG GCCTGGCGAT TTCGCTGCTG TTCGGTCTTG CGTCCTCGAC GCTGCTGACC GTGCTGGTGA TTCCGGCGAT CTATGTGGTG CTGCGCGGCG AGCGGCGTGG CGCATAG
|
Protein sequence | MKLGLSGRLT QATIGSPLTP LFLLAALIVG LFALAAIPRE EEPQISVPMV DIRVNADGLR APDAVELVTK PLEAIVKSID GIEHVYSQTE DDRVMVTARF LVGTKSEDAI LRVHEKIRAN LDRIPVGIAE PLIVGRGIND VAVSVLTLSP KPEAAARWTD KDLFELADKL RSELMKVDSI GLTYISGGGA QQIRVEPDPE KLSLFGVTLQ QLVAKVKDAN RSFLAGSVRD AGLVRSVSAG QTLSGVPDIG LLLISTRDDR PVYVKDVASV VIGPNASEHR VWSEARDGNG DWQRVPAVSL ALAKRAGANA VVVSQAIAER LEGLKARLIP DDVVVTVTRD YGETANDKAN ELLLHLGIAT ISIVVLIGFA IGWREALVTL VVIPTTILLT LFAANLMGYT INRVSLFALI FSIGILVDDA IVVVENIARH WAMQDGRPRL QATIEAVAEV GNPTVIATLT VVAALLPMLF VSGLMGPYMA PIPANASAAM LFSFFVAMVV APWLMLRLAP REGAVVAGHD AHDEGRLGRL YRRIATPIIA SKRSAWIFLL GVGLATLASM ALFATKSVTV KLLPFDNKSE IAVMVDLPEG ASLEATERVL FAAAQIARGL PEISSVQSYA GTPAPFNFNG LVRHYYLRER PELGELQVNL AGREHRARAS HAIALDLRER LKAVSVPAGT SIKVVEVPPG PPVLSTLLAE IYGPDAATRR AVALEMKKLF AEVPFIVDID DSIGEKRPRL RLSIDQDRLE FFGVEQRDVY DTIATLFGGV SVGYSHRGED RNPIEIAVRL PKRDLAWTEA LASTPVPANT LPGAKTVVEL GQLVKASMEQ GSPMLFRRDG RFADMVMAEL AGRFEAPLYG MFAVADKIDA HDWGTLPKPA IAMHGQPADE SKPTLLWDGE WEITYVTFRD MGAAFGAAIL GIYVLVVAQF RSFKLPLVIL TPIPLTLIGI LIGHWLLGAA FTATSMIGFI ALAGIIVRNS ILLVDFIRHS GGQGKTVREV VLQAGAVRFK PILLTALAAM IGAATILLDP IFQGLAISLL FGLASSTLLT VLVIPAIYVV LRGERRGA
|
| |