Gene RPC_3089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3089 
Symbol 
ID3974040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3429590 
End bp3430072 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content63% 
IMG OID637926197 
ProductMaoC-like dehydratase 
Protein accessionYP_532950 
Protein GI90424580 
COG category[I] Lipid transport and metabolism 
COG ID[COG2030] Acyl dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.767095 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.110769 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCGG TGGTGGAACG CGAGGCCTAT CTCGCGATGG CGGGGCAGGA AGTCGGCGTG 
TCGGCCTGGC ATCTGGTGGA TCAAACGCGG ATCGACGTAT TCGCCGACGC CACCGAAGAT
CATCAATTCA TCCACGTCGA TCCGCAGCGC GCGGCGCGCG AGACCGCGTT CGGCACCAGT
ATCGCCCACG GCTTTCTGAC GCTGTCGTTG CTCAGCGTGT TTTCCTACGA GGCGATGCCG
AAAATCCGCG GCGCCACCAT GGGCGTCAAT TACGGTTTCG ATCGGCTGCG CTTCATCTCG
CCGGTGCGGG CCGGGTCGCG GGTGCGCGGT CGCTTCATGC TGACCGAAGC GACGATGCGA
AAGCCGAACG AACTGCTGTC GCGCACCGCG GTGAGCGTCG AGATCGAGGG TGAGAAGCGC
TCGGCGCTGG TCGCCGACTG GCTCGGGTTG ATCTATTTCG CAGAACAAGA AACCACGGTT
TGA
 
Protein sequence
MTAVVEREAY LAMAGQEVGV SAWHLVDQTR IDVFADATED HQFIHVDPQR AARETAFGTS 
IAHGFLTLSL LSVFSYEAMP KIRGATMGVN YGFDRLRFIS PVRAGSRVRG RFMLTEATMR
KPNELLSRTA VSVEIEGEKR SALVADWLGL IYFAEQETTV