| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3035 |
|---|
| Symbol | |
|---|
| ID | 3973488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3340748 |
|---|
| End bp | 3347521 |
|---|
| Gene Length | 6774 bp |
|---|
| Protein Length | 2257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637926146 |
|---|
| Product | beta-ketoacyl synthase |
|---|
| Protein accession | YP_532899 |
|---|
| Protein GI | 90424529 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3321] Polyketide synthase modules and related proteins |
|---|
| TIGRFAM ID | [TIGR00517] acyl carrier protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.744051 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACG ACGTGAGTTA TCGTGAGGTC TATGCCGACA CGCAGCCGAT TGCGATCATC
GGAGCGGGCT GTCGTTTCGC CGGCGCGCGG AATCCATTCT CCTTCTGGCG TCGCATCGTC
GATGGAGAGG AGTTCACCCG GCGCGTCACG GAGGAGGATC TCCGACAGGC CGGTTTCGAT
CCGGGATTGC TCGACCATCC GGGATTTGTG CCGATTGCCA GCGTCGTGGA AGACGTCGAA
CACTTCGATG CAGAATGGTT CGGCTACTCG CCCGCCGAGG CAGCGACGAT CGATCCGCAG
CAACGCGTGT TCCTAACTTG CGCTTGGGAG GCGCTGGACA TGGCCGGCCT CGCATCTGCA
GCGCGCGGCA GCCGTGTCGG CGTCTTCGGC AGCGCGCGGA TGAGCACGTA CAGGCTGCCG
AAGGCGGGCG ACGTGCTGGA GATCATGACG CCACGAGTGT TTCAGCGCTT GATCGGCAAC
GACAAAGACT ATCTGGCGAG CCGCGTTGCC TACAAGCTCG GATTGAGCGG GCCTGCCGTC
ACGATTCAAT CGGCGTGCTC CAGTTCGCTG GTGGCGATCC ATACGGCCTG CGAGCAATTG
CGGAGCGGTG AGTGCGACCT CGCGCTCGCA GGCGGTGCCG CGCTGACCTT TCCCATGGCC
GCCGGCTACA TGCATCACTC CGGCATGATT TTCTCACCCG ACGGTCATTG CCGTCCGTTC
GACGCCGATG CCGGCGGCAC CTTCATGGGG AACGGCGTCG GTGTCCTGCT GCTCAAGCCT
TTGCTCAGAG CCCTCGAGGA CGGTGACGCG GTCATCGCCG TGATCCGCGG CTCGGCCGTC
AACAACGATG GCGACGGCAA GGCAGGCTAT ACGGCGCCAT CGTTGCGCGG CCAGCAGTCC
GTGATCGAGG AAGCAATGGC GCTCGCCGGA GTAACGGCGC AGGAAGTCGG TCTGGTGGAA
GCCCACGGCA CCGCGACTCC GCTCGGGGAT CCGTTGGAGG TGGAAGCGTT GGCACGGGCG
TTCGATGCCG GCTCGTCGGC CTCTCGATCC TGTGCTCTAG GTTCGATCAA AGCCAATACC
GGGCATTTGG ATACGGCCGC CGGAGTGGCG AGCTTGTTGA AGGCGGCCTT CGCCGTACGA
TATGGTCTGA TCCCGCCTTG TCTGCATTTC CAAACTCCGA ACCCCGCCTT GCGGATCGAC
GAGACGCCGT TCTACGTCCC GCAAGCACTG ATCCCATGGG AAGCGGAGCG TCGGATTGCC
GGTGTCAGTT CGTTCGGTAT TGGCGGGACG AATTGCCATG TCGTCGTGGA GCGGCTGCCG
CCCGGATTGC AGCCTGCCTC CCGTCAAGAA GGCCTAACCG CCATCCTCGT CGTGTCCGGA
CGCGACGAGG AGACGCTGCG CCAGACGGCC GCCATGCACG CCGATACTTT GCTCGACCAT
CCCCCTGAGG AAGGTCTGCT GAACTACTGC GCGACCGTTG CCCATCATCG CACGATGATG
CCGTATCGTC TGGCCGTCGC CGGTGACAGT GTCACGGCTC TGGTTGGGCG TTTGCACGAA
GTGTCGAGAC ACGGGAGCCT CGCCTCCGAG CTGATGACGG GGGGCCACAA TGGATGTGTG
GTGTGGGCGG CGAAGGGGAC GGAAGAACTG GGGGGTCGTC TCGGTGATAC CATCCCCAAG
CTCGACGACG TCATACCGCG TCCGCGCCAT CGTGCGCTGG CACCGTCCGC GACGCTGCTC
GGTGAACGTC ATGTCGAAGA GGATGGTGAA GACTCTCGGC GATCCGGTGG TGCGGCCGAC
GTTTGGCGTA CAGCCGTCGA TTCTCTGGCC GCCGCCGCCG TCCGAACGAC CGACGATCAC
GACTGGTCCA GCCTTTCGGA AGAGGCGGCC ACCGTACGCG AGTTGCACGC GGTTCACGCC
GGGCAGGCAG TCGTTGATCT CGCGCTGTTT CCCGACGCAA AGACATATCT GACGATCGAT
GAGGTGCTCC AACGCGGGCG AGTCAAACCG GTCTATCGTC AACTGCTTCA GCGGCTGTTG
CGGGATCTCT CGGATGAGGG TGTCCTGGCT CGGGACGGCG AGCGCTATGG TCGGCTCCGG
CTTCGTGCTG CGGGCGCGAC TGACGGGCTG CTTGCTAAGA TGCGCGTGCA CGGCTACGGC
CGTCTCGCCG ATCTTGTGAT GCGGGCCGGC GGGCATCTCG CCGCCATGTT GCGCGGCGAA
GTCGACCCAG TCTCCGTCGT ATTCCCATCG GGAGCGATGG ATGACGTCGA GGAGATGTAC
GAACGGCAAC GCGATTCCGT CTATCTCAAC GGCATCGCCG CCGAAGCCGT GGCTGCGGTG
GTGGCTGCAA TGCCACGAGA CGCCGAAATC CGCGTCCTCG AGATCGGCGC GGGGACGGGG
GGCACGACGG GCGCGCTCCT GCCCACGCTG CCGCGATCTC GCTGCGACTA CCTGTTCACG
GATATAGGGC CGCTGTTTCT TCGACGTGCG GAGAAGAAGT TCGCGGCTTA TCCGTTCATT
CGCTACGGAA CGTTCGATTT CGAAAGAAGC CATACGGAGC AGGGGCTGGC CGAGGCGCAA
TTCCATCTCA TCGTGGCTGC AAACGTCATT CACAATGCGC GAGACCTCCG CGCATCGCTC
GGCCGCGCAC GAAGACTCCT GGCTCCGGGA GGCATCCTGC TGTTGCGCGA AATCACCGAG
CCCAAGCCGC TGTTCGACTT CGTATTCGGT CCGTTGACCC CAGAAGTATC CGACATCGAG
GAGCGCGGCG GTGAATTTTT CCCGGCGATC GATCGCTGGA CCGAAGCCCT GAGCGATGCC
GGCTTCGTCG GCTGGACTTC GGCTCCCGGC GTGGAGCAGA TCACGGCCCG CATCGGCGAG
AGGATCATCC TTGCGCGAAA CTCCGGCGAC CTGAAATTTG CGACGCGGCG TGCCCCAGCA
TGCGGCACGA CCGCACCGAT GGACGTGGCC GGACTGTTGC AGCGTCTTGT GGAGCGACAC
GGCTGCTGCC ACTGGCGCCT CGAGGACGTA TCCTGCGCAC CTGCGACCGG CGCTGAGAAT
GAGCAATGGC GTGATTCCGG ACAGGAGCTC GCACTGTTGG GGGGGGCTTC CGGCAGAGTG
CTGCTGAGCG GCCGACGTGG TACGAAGACT GTGGCGATGC TGCCGCGCCT GGATCGCACC
CGCGCCCGGA GGCTCGACGG CGAGCCGCGG CGGGTGCTCT CCGAAATGCT CGGCGTTCTT
GGTCCGAACT GCGCATTTCA TGCGAGTTCG ATCGAATGCA CCAGTGTACC GAAGGAGGGG
GCGCACTGGC TGATGCAACA TAAGTCCGAT GCCGGCGTGG ATCTGACCTT GTTCGACGAT
GCCGGCTGGC CGCTCATTCG GTTGGAGCAG GCGCATCCTG TCTCCGAAGC GGATGCGGCA
TCTCCTTCGC TGTATCGTTG GACGTGGCGC GCCGAGGACG GCGAAAGCGC TTGGCAAGAG
ATCTCCTGGG ACGCGGAGCG CATTGTGCTG CTGTCCGAGG ACGGATCGAA TCTCAGCGAG
CTACTCGGCG TCGCGCCGGT ACGGGATTTC GCCTCGGTGC CGTCCAATGC GCCGGCGGGC
GCGCATATCG TCGTCGATCT GACAGGCGGA TCGACCCGGC CCATCGCACA GCTCTATGCC
GACGTAGCGG CAATCCTGGA CATCGCTGCT CGCACGCATG GGCGAGTGAC GGTGATGACG
TCGGGAGCGG CCGCTGTCGC TGCTTGGGAC GCAGTCCGTC ACCCAGAAAT GGCGGGTATT
CCGGCTTTGC TCCGTGTCGC GGGGCGTGAG CGGCGCGACC TTGTCCTGCG CTGGATAGAC
GTTGATGAAC CGGCCGACCG CGATGGCCGA TGGAAGCGCT GGTTTGGCGG CGACGCTGCC
GAGGACGCCA TTGCCGTGCG CCATGGCCAG ATCTTCGTTC CGCGTTTGAC TAGGCTTGCG
ACGGCGAGGT CACTCGCGAC CATCAACCAA GATGGTATTT ATCTCATCAC CGGTGGGTTG
TCGCCGCTCG CACTGTCCAC GGCCGACTGG CTCGTTGCGC AAGGCTGTCG GGAGATTTGG
CTGGTGGCAC GTCGCCGACC AGCGGCGAAC GAAGCAGATC GCGTCGAGGC CCTCCGAGCG
GCCGGAGCCA ACGTTCGGCT TTCATGCGAT GTCGATGTGG CTGATCTGAC GGCGTTGGAA
ACCCTATTGA AGTCCATTCA GCAAGACGCT CTCCCGCTTG CCGGCATCTT TCATCTCGCC
GGAGTTCTGC AGGACGGTTC CATTGCGACC CTCGGCCCAA GCCATTTTGC CCAAGCTATC
GCTCCCAAAT GGGTAGGGGC GTGTACCTTG CTGTCGTGGA TGCCGCGGCT GAAGCCGGAT
TTCCTGCTCT TGTATTCATC GGCGGCGACG ATCTTCGGCC CGCCGGGGCA GGCAGCTCAC
GCGGTTGCCA ATGCGATGCT CGAAGGCCTT GCGCGGCAGG CCAGCGCAAG AGGCCTGCCG
GTCAAGGCGC TGTCCTGGGG ATTCTGGGAG GAGGAACGCA GCGATCGCGC CGAACTGACC
AAGAGTCTGC ACGGACAGGG CATGCTCGGC TTGGCACCGA ACGAAGCGTT CCGGCTCATT
CACGCGGCCC TGGCCGATGC GGCAGCGGTT GTCGCGCCGA TGCACATCGA TTGGGAACGC
ATCGCGGATC AGCTTGGGGA GTCGTCGCCA CGCATCCTCG AAGACTGCGT TCGTCCGACC
GGGAGCGCGC CGCTGAGGCC CGCATCTCGC AACGTCCGTT CGAAGCTCCG TGAAATCGTC
GCCTTGCTTC TCAAAGCCGA ACCGATGACG TTGGATGTTG ACGCCAATCT GGTGCAGCTT
GGCCTCGATT CACTGATGTT TCTCGAACTC AGCCATACGC TGAAGGTTGA ATTCGGCGTC
GATGTGTCGG CCGAAGTCGC AATTGAATGC AACACTCTGT CCAAGCTTTC CGATTGTCTC
CAGTCGCAGC TGGCGGAAAC TGCGGTGTCG GATGTCGACG AGGTGCAGGC GATTCTTCGT
CGCGAACTAG CAGTGCTTCT TCGCCGGCCC GAGGACCAAC TCGATCCGAC ATGCAACTTG
GTCCAGAGCG GTCTTGACTC GCTGATGTTC CTCGAGTTTA GCCAGCGCGT TTCGAAGACG
CTCGGCGTCA CCGTTTCGGC CGAGACCGCG CTACAGTACG ACACGCTGGC CAAACTCGCC
GCGGCTGTCG TCGAGCAACG ATCGGGACGT CGCAAGACAG CGAGTCCCGT TCGTGCGGCT
CTGGACGAGC TCGCTGCAGC CGAGCCACAT CTGTTGCTGA CCAACGGCGA CTTGTGTCCA
TCGTCGGCGC CGGCTTCGGC CCATGCCTCG CTCTCGCCAT TGCAACGAGC CTGGTGGCTC
GGTCGTAGAG ACGGACGGAT TCTGGGGGGG ATCGCGCGCC ATCTTTACGT CGAATACGAC
AAGACTCCGA CGGTCTTCGA CATAGACGCC TTCGAGGTGG CCTGGAACAG TCTCATCGTC
CGTCATGCCG GGTTGAGAAC GACGATCGAT GCCGACGGCA ATGCCCGCGT GTTCGAGGAG
ACGCGCGCTT ATGCGATTGT TCGCGAAGAT CTCCGCGGCC TCGACGTATT GCAGCGCGAC
CTCCGTTTGG CGGATATTCG CGAGCGGATG AGTGGGCAAC GTCTCGATCT TTCGGCTTGG
CCGCATTTCG AGTTGCGGGC GTCGCTGCTC GACGACAGCC GCCTCCGTCT TCACCTCGAC
ATCGATACCA CTTGTGTCGA TATCGAGAGC TTTCAAGTGA TCCTGCACGA GCTCGGCGCC
CTCATTCGTG AGCCAGAGCG ACAACTTCCG TCACTGAGCT TCTCGCCGTC CGACTATCGG
CGAGGAATGG AGTTGATCGG CACGACGAGT GTTCATGCCG ACAACGAGGC CGATGCGCTG
CGGCGTGCGG CGAGGTTAGC CGGTGCGCCC GATCTTCCAT TGGCCTTGAA TCCAGCGGAG
CTCACGACGA TTCGTTTCCA GATCCGTCGT GAAAGTCTGA CGAGAGTCGA TTGGCTCGCA
CTGAAAGGCG AGGCGCGCCA CCGAGGAATC TCGCCCACGG CACTTCTGCT GTCTATCTAC
GCTGCGGCAC TGTCCGCCTG GTGCGGCGAT TGCTCGCGGT TCGCACTGCA GCTCGCTTAT
TCCGACCGCA GGTCGCTTCA CGCGCAAGTC ATGAATATCG TCTGCGACGC GAGCGCGATC
CTGCCGATCG ATTTCGACCT GCGCGAGAAT GCGAGCTTTG CCGAAATGGC ACGCACAACG
CAGGCCAAGA TCGACGCGCA CCTCGCGCAC GAAACGTACG ACGGCGTTTC GATGCTCGCT
GAGACGAACC ATGGCCGGCG GTTTCCGGAT ACGCCGTCTC TCGGGTTGCC GATCGTGTTC
ACCAGCCTGT TCGGTGTTCG CAGCGCCTAC GCTTTGCCCG AGACCGCCGA TCCGGTCCTC
GGCATGCCGA ACTACGAATA CGCGGCGCAG CCCCAGGTCG CGCTCAATTT TCAGGCGCTC
GAAGAGGAAC ACAGCATGCT GTTCAATCTA GACTGGGTCG ACGGGCTGTT TCCCGATCTG
ATGGGGGAGG CGCTCATCCT CGCGCTGTCC AGCCTGCTTC AATCGTTGGC TGCGAATCCC
GGCACGTTTG ATCTTCCTCT GTCGAAGCTC GCCTCCGCCG ATCCCGAGAT CGGCGTCGTC
CGGACCCAGG CACCGTTCAG TTTGGCCGCT TGGCTACAGC GGGATGTCCG ATGA
|
|---|
| Protein sequence | MKDDVSYREV YADTQPIAII GAGCRFAGAR NPFSFWRRIV DGEEFTRRVT EEDLRQAGFD
PGLLDHPGFV PIASVVEDVE HFDAEWFGYS PAEAATIDPQ QRVFLTCAWE ALDMAGLASA
ARGSRVGVFG SARMSTYRLP KAGDVLEIMT PRVFQRLIGN DKDYLASRVA YKLGLSGPAV
TIQSACSSSL VAIHTACEQL RSGECDLALA GGAALTFPMA AGYMHHSGMI FSPDGHCRPF
DADAGGTFMG NGVGVLLLKP LLRALEDGDA VIAVIRGSAV NNDGDGKAGY TAPSLRGQQS
VIEEAMALAG VTAQEVGLVE AHGTATPLGD PLEVEALARA FDAGSSASRS CALGSIKANT
GHLDTAAGVA SLLKAAFAVR YGLIPPCLHF QTPNPALRID ETPFYVPQAL IPWEAERRIA
GVSSFGIGGT NCHVVVERLP PGLQPASRQE GLTAILVVSG RDEETLRQTA AMHADTLLDH
PPEEGLLNYC ATVAHHRTMM PYRLAVAGDS VTALVGRLHE VSRHGSLASE LMTGGHNGCV
VWAAKGTEEL GGRLGDTIPK LDDVIPRPRH RALAPSATLL GERHVEEDGE DSRRSGGAAD
VWRTAVDSLA AAAVRTTDDH DWSSLSEEAA TVRELHAVHA GQAVVDLALF PDAKTYLTID
EVLQRGRVKP VYRQLLQRLL RDLSDEGVLA RDGERYGRLR LRAAGATDGL LAKMRVHGYG
RLADLVMRAG GHLAAMLRGE VDPVSVVFPS GAMDDVEEMY ERQRDSVYLN GIAAEAVAAV
VAAMPRDAEI RVLEIGAGTG GTTGALLPTL PRSRCDYLFT DIGPLFLRRA EKKFAAYPFI
RYGTFDFERS HTEQGLAEAQ FHLIVAANVI HNARDLRASL GRARRLLAPG GILLLREITE
PKPLFDFVFG PLTPEVSDIE ERGGEFFPAI DRWTEALSDA GFVGWTSAPG VEQITARIGE
RIILARNSGD LKFATRRAPA CGTTAPMDVA GLLQRLVERH GCCHWRLEDV SCAPATGAEN
EQWRDSGQEL ALLGGASGRV LLSGRRGTKT VAMLPRLDRT RARRLDGEPR RVLSEMLGVL
GPNCAFHASS IECTSVPKEG AHWLMQHKSD AGVDLTLFDD AGWPLIRLEQ AHPVSEADAA
SPSLYRWTWR AEDGESAWQE ISWDAERIVL LSEDGSNLSE LLGVAPVRDF ASVPSNAPAG
AHIVVDLTGG STRPIAQLYA DVAAILDIAA RTHGRVTVMT SGAAAVAAWD AVRHPEMAGI
PALLRVAGRE RRDLVLRWID VDEPADRDGR WKRWFGGDAA EDAIAVRHGQ IFVPRLTRLA
TARSLATINQ DGIYLITGGL SPLALSTADW LVAQGCREIW LVARRRPAAN EADRVEALRA
AGANVRLSCD VDVADLTALE TLLKSIQQDA LPLAGIFHLA GVLQDGSIAT LGPSHFAQAI
APKWVGACTL LSWMPRLKPD FLLLYSSAAT IFGPPGQAAH AVANAMLEGL ARQASARGLP
VKALSWGFWE EERSDRAELT KSLHGQGMLG LAPNEAFRLI HAALADAAAV VAPMHIDWER
IADQLGESSP RILEDCVRPT GSAPLRPASR NVRSKLREIV ALLLKAEPMT LDVDANLVQL
GLDSLMFLEL SHTLKVEFGV DVSAEVAIEC NTLSKLSDCL QSQLAETAVS DVDEVQAILR
RELAVLLRRP EDQLDPTCNL VQSGLDSLMF LEFSQRVSKT LGVTVSAETA LQYDTLAKLA
AAVVEQRSGR RKTASPVRAA LDELAAAEPH LLLTNGDLCP SSAPASAHAS LSPLQRAWWL
GRRDGRILGG IARHLYVEYD KTPTVFDIDA FEVAWNSLIV RHAGLRTTID ADGNARVFEE
TRAYAIVRED LRGLDVLQRD LRLADIRERM SGQRLDLSAW PHFELRASLL DDSRLRLHLD
IDTTCVDIES FQVILHELGA LIREPERQLP SLSFSPSDYR RGMELIGTTS VHADNEADAL
RRAARLAGAP DLPLALNPAE LTTIRFQIRR ESLTRVDWLA LKGEARHRGI SPTALLLSIY
AAALSAWCGD CSRFALQLAY SDRRSLHAQV MNIVCDASAI LPIDFDLREN ASFAEMARTT
QAKIDAHLAH ETYDGVSMLA ETNHGRRFPD TPSLGLPIVF TSLFGVRSAY ALPETADPVL
GMPNYEYAAQ PQVALNFQAL EEEHSMLFNL DWVDGLFPDL MGEALILALS SLLQSLAANP
GTFDLPLSKL ASADPEIGVV RTQAPFSLAA WLQRDVR
|
|---|
| |