| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3018 |
|---|
| Symbol | |
|---|
| ID | 3973625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3314413 |
|---|
| End bp | 3315465 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637926129 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_532882 |
|---|
| Protein GI | 90424512 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.322534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTGT TTCGACGCCT CGAGGGCCCG CAGACGGTGG GGCGAGGGCC GGCGTTCTGG
TCGCTGTTCG GCGTCGTGTT GCTGTCGGCG CTGGCCTATC CGCTGATCAG CGACGGCTAC
ACGGTGGGCA ACACGGTGTA CTTCTTCGTC TGGGTGTTCA TCGCGCTGAG CCTGTGTCTG
ATCTGGGGAT ACGGCGGCGC GTTGTCGTTC GGCCAAACCG CGTTCTTCGG CATCGCCGGC
TACTCCTACG GCATTCTGAC GATCAATTTC GGCTCGGCCT ATGGGCTGAC GCTGGTCGCG
ATGCTGCTGG CGATCGGCGT TGCCGCGTTG GTGGCGGTGC TGCTCGGTTA CTTCATGTTC
TTCGGGCGCA TCGAGGGCGT GTTCCTCGGC ATCGTCACCC TTGCGGTCAC CCTGATGCTG
GAACGCTTCA TGGCGCAGAC CGCCGGGCCG GAATGGCGGA TCGGCAGCGC GCGGCTGAAC
GGCTTCAACG GCATGAGCGG GATGCCGCCG CTCACCATCC CGTGGTTCGA CGGACCGATC
GTGCTGTTTG CCGATGTCGG ACTGTACTAC TTCGTGCTGG GCCTGGTCAT TGTGGTCTAT
CTCGGCTTGC GCATTCTGGT GAACTCGTCG TTCGGCAACG TCATCGTGGC GATCCGTGAG
AACCCGCAGC GCGCCGAGAT GCTGGGCTAC GACATCCGCA AGTTTCAGCT CATCAACTTC
GTGATCGGGG CGGCGCTCGC CGGGATGTCG GGCGTGCTCT ACACCGCCTG GGGGCAATAC
ATCACGCCGT CCAGCATGGG CATGACCTCG GCGGCGTTGC CGTTGATCTG GGTTGCGGTC
GGCGGTCGCA GCGACCTGAC CTCGACGGTG ATCGGCACGC TGCTGGTGCT GGCCGGCTTT
CAGGCGCTGA CGATCTACGG CAGCCAGTAT GCGCTGGTGG TGATGGGCGT GCTGTTGCTG
CTGACGGTGC TGATCGCGCC GAACGGCCTG GTGCTGGGCG CGATGAACTG GATTGCGGGA
CTGGTCTCGC GCAGCAAGCG GGAGCGGAAC TGA
|
|---|
| Protein sequence | MSLFRRLEGP QTVGRGPAFW SLFGVVLLSA LAYPLISDGY TVGNTVYFFV WVFIALSLCL
IWGYGGALSF GQTAFFGIAG YSYGILTINF GSAYGLTLVA MLLAIGVAAL VAVLLGYFMF
FGRIEGVFLG IVTLAVTLML ERFMAQTAGP EWRIGSARLN GFNGMSGMPP LTIPWFDGPI
VLFADVGLYY FVLGLVIVVY LGLRILVNSS FGNVIVAIRE NPQRAEMLGY DIRKFQLINF
VIGAALAGMS GVLYTAWGQY ITPSSMGMTS AALPLIWVAV GGRSDLTSTV IGTLLVLAGF
QALTIYGSQY ALVVMGVLLL LTVLIAPNGL VLGAMNWIAG LVSRSKRERN
|
|---|
| |