Gene RPC_2789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2789 
Symbol 
ID3970129 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3028941 
End bp3029552 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content68% 
IMG OID637925899 
ProductAllergen V5/Tpx-1 related 
Protein accessionYP_532656 
Protein GI90424286 
COG category[S] Function unknown 
COG ID[COG2340] Uncharacterized protein with SCP/PR1 domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0921233 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.40167 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTGG CTTGCTCGAT GGGAGTTGCG CTGGCGCTGC TGTTGCCCGC GGCGGCCTTG 
GCGCAGCCCG CCGCGGCCCC GGCGGCACCG GCTCCGGCCG GCCCTGCCGA GATGATTTCG
AACTTCCGCC TCGCCCATGG CGAGGGACGG GTGACGCTGG ACCTCAAGCT CACGCAAATC
GCCCATGACC AGGCCGCCGC GATGGCCGCC AAGGATGTGC TCAGCCACGA AGTGCTCGGC
CCGTTCGTCA ACCGCGTGGC GCCGGCCCGC GCCGGCCAGG CCGCGGAGAA TGTCGCCTAC
GGCAATGACG GTTTCCCGAA GACGCTCGAG CAATGGATCC ACTCGCCGGG GCATCTCAAG
AATCTGCTGA TGCCCGGGGC GTCGCGCGTC GGAGTCGCCA GCGCCCGCAG CGCAGCCACC
CGGCGCACCT ATTGGGCGAT GGTGATCGCC GGGGGCTACG AAAAAACCCA GCCGCCGCGA
TCGGCGAAGA AACCGGCACC AAAAACCGCA CCAAAAACCG CGGCGAAAAC CGCGGCGACA
TCAGCGCCGA AAGCTGCATC GCAGCCGCCG CGCGAGAGCT GCCGGATGAA GCTGCTCGGC
CTCTGCTTGT AA
 
Protein sequence
MKLACSMGVA LALLLPAAAL AQPAAAPAAP APAGPAEMIS NFRLAHGEGR VTLDLKLTQI 
AHDQAAAMAA KDVLSHEVLG PFVNRVAPAR AGQAAENVAY GNDGFPKTLE QWIHSPGHLK
NLLMPGASRV GVASARSAAT RRTYWAMVIA GGYEKTQPPR SAKKPAPKTA PKTAAKTAAT
SAPKAASQPP RESCRMKLLG LCL