| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2722 |
|---|
| Symbol | |
|---|
| ID | 3970275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2954339 |
|---|
| End bp | 2956225 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637925832 |
|---|
| Product | sigma-54 factor, interaction region |
|---|
| Protein accession | YP_532589 |
|---|
| Protein GI | 90424219 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.351091 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACACG ACATCGTCGT TTTTTCGGTG ACGACGTCTC TGACCAAGAC GATCAAGCGG
GTCCTGGCCG ACATGGGCGA GTCGTTTCGG GTCTATGAGG AAGATCTGTT CAACGTCCTG
CCCCTGGTCG AGGCGGAGGT GAAGGCTGGC GCCCGTGTCA TCATCAGCCG AGGCGGGACT
GCGGACCTGA TCCGGAAGCA CTTCACCCCG CCCGTCGTGG AGATCCATCA CGACTATTTC
GGCGTCCATA AGGTCGTTCA GCAGGCGCTC GAAGTCTCCG ACAAAATTGC GACCGTGGCA
TTCCCGCTCT ATGCGGAAAT CATGCAAAAC TACTCGGAGA TGTGCGGGAT ACCCATTTTC
ACGCGGGTGA TCCGCGAGAG TGGGGAGATC GAGGAGGCGC TTGAGGAACT GCAGGCGCGC
GGAATTCGCG TGGTGATCGG CGGCCTGAGC GTCGCGCGCA TGGCCAAGCG GTTCGGCATT
GCCGCAATTA TGGGCGACGC CGACGAAATG GCAATTCGAC TGGCCGTCGA GCAGGCGCGC
CACACGCTGA AATATGTTCT CAACCTCGAT CGCCAGTACA ACATCGTTTC AGCGATATTG
AACTGCGCCA ATGAAGGCAT TCTTGGCGTC GACGGGTCAG GCACGATTTT CGAGTTGAAC
CACCATGCCC ATCGCCTGCT CGGATGCGGA CGTGGCGACA ATATCAATAC TATACTGCCG
GAGAGCGATT CCCGGATCGC CATCACCAAC GGTGAGCCTA TTCGAAGCCG CATCGTCAAT
TCAGGCAAGG CGACATTGAT TTTCAATGCG TCGCCGATCG ACTATGGCGA GAACGGCGGC
GGGACGGTGC TAACCGTTCA GGAAGGCGAC TACATCCAGG GCATCAGCCA GAAAATCCGG
CAACAACATA TCGCGAAAGG TCACGTTGCT CGCATTCGCT TCGAAGACAT CGTCGGCAAG
GGCGAAGCGA TCCACCACAC CATCGAACGC GCCAAGAAAT TCGCGTTGTC TGAAAGTTCA
GTGCTGATCA TCGGCGAAAC CGGCACCGGA AAGGAGCTGT TCGCCCAAAG CATCCACAAT
CACAGCCGCC GGCACAGTAA GCCCTTCGTC GCAATCAATT GCGCGGCACT GCCGAACAAC
GTTCTGGAAA GCGAGCTCTT CGGCTACGTC CGGGGGGCAT TCACGGGCGC GAAAGACGCA
GGCAAGTCCG GCATCTTCGA ACTCGCACAT GGCGGCTCCG TATTCCTCGA CGAGATCGGC
GAGATCCCCA TCGAAATGCA AGCGAAGCTT CTGCGCGTCA TCCAGGAACG CCAAGTGCAG
CGGATCGGCG ATGATAAGTT GGTTCCTGTG GATGTCCGTG TGATTTCCGC AACGAACAAG
AACGTCGACA ACGAAGTCAA GCTCGGACGA TTTCGGGAGG ATCTCTATTT CCGCCTCAAC
ACACTGGAAT TGGAGCTTCC GCCACTGCGA GAACGCACCG GCGACGTGCC GACACTCATA
CGCCACTTCA TGGGCAGGGC GGGCCGCAGG GAGGTGTCGT TCACACCAGA CGCCCAAAGA
TTTCTGAACG TATATTCCTG GCCCGGCAAC GTCCGCCAGC TTGGCAACTT CATCGAGCGC
CTGAACGTTC TGTACGACCA GCCCTCAATG TCCTTGTCCG AGGTCTGCGA CTTGCTCGGG
ACAGCTGCAG GCGCATCCGT TCAGGGGGCC GCGCAGCAGC GACCATCGAC CTTGGCCCCG
GACGACGAAA ACGTGCTGGA GAAGATGGAG CGGGACCTGA TCGCGGAAGC CCTAGACATC
ACGACCGGCA ATCGAGAGAA AGCCAGCATC ATTCTCGGCA TCAGCCCGAG CACGCTGGGA
CGGAAAAAGA AGCAATACGG GCTCTGA
|
|---|
| Protein sequence | MSHDIVVFSV TTSLTKTIKR VLADMGESFR VYEEDLFNVL PLVEAEVKAG ARVIISRGGT
ADLIRKHFTP PVVEIHHDYF GVHKVVQQAL EVSDKIATVA FPLYAEIMQN YSEMCGIPIF
TRVIRESGEI EEALEELQAR GIRVVIGGLS VARMAKRFGI AAIMGDADEM AIRLAVEQAR
HTLKYVLNLD RQYNIVSAIL NCANEGILGV DGSGTIFELN HHAHRLLGCG RGDNINTILP
ESDSRIAITN GEPIRSRIVN SGKATLIFNA SPIDYGENGG GTVLTVQEGD YIQGISQKIR
QQHIAKGHVA RIRFEDIVGK GEAIHHTIER AKKFALSESS VLIIGETGTG KELFAQSIHN
HSRRHSKPFV AINCAALPNN VLESELFGYV RGAFTGAKDA GKSGIFELAH GGSVFLDEIG
EIPIEMQAKL LRVIQERQVQ RIGDDKLVPV DVRVISATNK NVDNEVKLGR FREDLYFRLN
TLELELPPLR ERTGDVPTLI RHFMGRAGRR EVSFTPDAQR FLNVYSWPGN VRQLGNFIER
LNVLYDQPSM SLSEVCDLLG TAAGASVQGA AQQRPSTLAP DDENVLEKME RDLIAEALDI
TTGNREKASI ILGISPSTLG RKKKQYGL
|
|---|
| |