| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2570 |
|---|
| Symbol | valS |
|---|
| ID | 3970909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2789421 |
|---|
| End bp | 2792279 |
|---|
| Gene Length | 2859 bp |
|---|
| Protein Length | 952 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637925680 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_532439 |
|---|
| Protein GI | 90424069 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.252314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAA AAACCTATCA GCCCGCCGAC ATCGAAGGCC GTATCGCACA AGCCTGGGAC
GCCGAAGGCG CCTTCAAAGC CGGCCGCCCG GAGCGCCGCG ACGCCATTCC GTTCTCGATC
GTGATCCCGC CGCCGAACGT CACCGGCTCG CTGCATATGG GCCACGCGCT CAACAACACG
CTGCAGGACA TCCTGTGCCG GTTCGAGCGG ATGCGCGGCC GCGACGTGCT GTGGCAGCCC
GGCACCGACC ACGCCGGCAT CGCCACCCAG ATGGTGGTCG AGCGGCAGCT GATGGAGCGC
CAGGAGCCGA GCCGCCGCGA CATGGGCCGC GAAAAGTTTC TCGAGCGGGT GTGGCAGTGG
AAGGCCGAAA GCGGCGGCGT CATCGTCAAC CAGCTGAAGC GGCTCGGGGC CTCCTGCGAC
TGGTCGCGCG AGCGCTTCAC CATGGACGAG GGGCTGTCGC GCGCGGTCGC CAAGGTGTTC
GTCGAGCTGC ACCGCCAAGG CCTGATCTAC AAGGACAAGC GGCTGGTCAA TTGGGACCCC
AAGCTGCTCA CCGCGATCTC CGATCTCGAA GTGCAGCAGG TCGAAGTCAA GGGCAACCTG
TGGCACCTGC GCTATCCGCT GGACGGCGTC GAATTCAATC CGGACGATCC GGAGACCTTC
ATCGTGGTCG CCACCACGCG GCCGGAGACC ATGCTCGGCG ACACCGCGGT TGCGGTCAAT
CCGGACGACG TGCGCTATTC GCATGTGGTC GGCCGCAATG TCATCCTGCC GCTGGTCGGG
CGCAAGATTC CGATCATCGC CGACGATTAC TCCGATCCCG AAAAGGGCTC CGGCGCGGTG
AAGATCACGC CGGCGCACGA CTTCAACGAC TTCGAGGTCG GCCGAAGGCA CAACCTGCCG
CAGATCAACG TGCTCGACAT CGAAGGCCGC ATCGACCTCG TCGACAACGA AGCCTATCTG
CACGGACTGC CGGATGACGC CGCGCAGTTT GCCGAAGAAC TGCATGGGCT GGAACGCTTC
GCCGCGCGCA AGAGCATCGT GGCGCGGCTC GAAGAGCTCG GCTACCTGGA GAAGATCGAG
CCCAACGTCC ACATGGTGCC GCACGGCGAC CGCTCCGGCG TGGTGATCGA GCCGTATCTG
ACCGACCAGT GGTACGTCGA CGCCAAGACG CTGGCGCAGC CGGCGATCGC CGCGGTGCGC
TCGGGCGCGA CGACCTTCGT GCCGAAGAAC TGGGAAAAGA CCTATTTCGA ATGGATGGAC
AACATCCAGC CCTGGTGCAT CTCGCGGCAA TTGTGGTGGG GCCATCAGAT CCCGGCCTGG
TACGGCCCGG ACGGCAAGGT GTTCGTCGCC GAGACCGAGG ACGAAGCGGT CGGCAACGCG
CTCGGCTACT ACGTCGAGCA GGAAGTCATC ACCCCGGCGC AGGCGCATGC GATGACCCAG
GACGCTTCGC TTCGCGACGG CTTCATCACC CGCGACGAGG ACGTGCTCGA CACCTGGTTC
TCCTCGGCGC TGTGGCCGTT CTCGACGCTG GGCTGGCCGG ACGACGACAC CGATTGCAAG
CGCTACTACC CGACCAACGT GCTGGTCACC GGCTTCGACA TCATCTTCTT CTGGGTCGCC
CGGATGATGA TGATGGGGCT GCACTTCATG GACGACGTGC CGTTCCCGAC CGTCTACATC
CACGCCCTCG TCCGCGACGA GAAGGGCGCC AAGATGTCGA AGTCGAAGGG CAACGTGATC
GATCCGTTGC ACCTGATCGA CGATTACGGC GCCGACGCGC TGCGCTTCAC GCTTGCCGCG
ATGGCGGCGC AGGGCCGCGA CATCAAGCTC GCCTCCAGCC GCGTCGAGGG CTACCGCAAT
TTCGCGACCA AGCTGTGGAA TTCGAGCCGC TTCGCCGAGA TGAACGCCTG CGCGCTGCCC
GCGGATTTCG ATCCGACCGC GGCGAAGCAG ACGCTGAACC GCTGGATCGC GCACGAGACC
GTGCGCGCGG TGCGCGAGGT CACCGAGGCG ATCGAGGCCT ATCGCTTCAA CGACGCGGCG
GGCGCCGCTT ATCGTTTCGT CTGGAACGTG TATTGCGACT GGTATCTCGA ACTCGCCAAG
CCGGTGCTGC TCGGCGAGGA CAGCCCGGCC AAGGCCGAGA CCCGCGCCAT GGTGGCCTGG
GCGCGCGATG AAATCCTCAA GCTGCTGCAT CCGTTCATGC CGTTCATCAC CGAAGAGCTG
TGGGCGGTGA CCGCGGAGCG CGACACGCTG CTGACGCTGA CGCCGTGGTC GCGCAAGGCC
GAGACCGCGG TCGAGGTGTT CGACGCCCCG GCGCTGACCG ACCCGATGGT GCCGCCGGTG
ATCCTGCCGG CGCCGCACGT CGCCGACTTC AGCGATCCCG CGGCCGAGGC CGAAATCGGC
TGGGTGGTCG ACCTGGTCAC CGCGATCCGT TCGGTGCGCG CCGAGATGAA CATCACGCCG
TCGACGCTGA CGCCGCTGGT GCTGGCCGGC GCTTCGGCGG AGACCCGCGA CCGCGCGCAG
CGCTGGAGCG ATGTGGTGAA GCGGATGGCC CGGCTCGGCG AGATTTCGTT TGCCGACAGC
GCACCGCAGG GCGCGGTGCA ACTGTTGATC CGCGGCGAGG TCGCAGCATT GCCGCTGAAG
GGCGTGATCG ACGTCGCCGC CGAGCAGGCC CGGCTCGACA AGGAACTGGC GAAGGCCGAG
GCCGACATCA AGCGGGTCGA CGCCAAGCTC TCCAACGAGA AATTCGTCGC CAACGCGCCG
GAAGAGATCG TCGAGGAAGA GAAGGAAAAG CGCGAGGCCG CGGTCGCGCG CAAGGCCAAG
ATTTTGGAAG CGCTGGAGCG GCTGAAGAAC GCCACCTGA
|
|---|
| Protein sequence | MIEKTYQPAD IEGRIAQAWD AEGAFKAGRP ERRDAIPFSI VIPPPNVTGS LHMGHALNNT
LQDILCRFER MRGRDVLWQP GTDHAGIATQ MVVERQLMER QEPSRRDMGR EKFLERVWQW
KAESGGVIVN QLKRLGASCD WSRERFTMDE GLSRAVAKVF VELHRQGLIY KDKRLVNWDP
KLLTAISDLE VQQVEVKGNL WHLRYPLDGV EFNPDDPETF IVVATTRPET MLGDTAVAVN
PDDVRYSHVV GRNVILPLVG RKIPIIADDY SDPEKGSGAV KITPAHDFND FEVGRRHNLP
QINVLDIEGR IDLVDNEAYL HGLPDDAAQF AEELHGLERF AARKSIVARL EELGYLEKIE
PNVHMVPHGD RSGVVIEPYL TDQWYVDAKT LAQPAIAAVR SGATTFVPKN WEKTYFEWMD
NIQPWCISRQ LWWGHQIPAW YGPDGKVFVA ETEDEAVGNA LGYYVEQEVI TPAQAHAMTQ
DASLRDGFIT RDEDVLDTWF SSALWPFSTL GWPDDDTDCK RYYPTNVLVT GFDIIFFWVA
RMMMMGLHFM DDVPFPTVYI HALVRDEKGA KMSKSKGNVI DPLHLIDDYG ADALRFTLAA
MAAQGRDIKL ASSRVEGYRN FATKLWNSSR FAEMNACALP ADFDPTAAKQ TLNRWIAHET
VRAVREVTEA IEAYRFNDAA GAAYRFVWNV YCDWYLELAK PVLLGEDSPA KAETRAMVAW
ARDEILKLLH PFMPFITEEL WAVTAERDTL LTLTPWSRKA ETAVEVFDAP ALTDPMVPPV
ILPAPHVADF SDPAAEAEIG WVVDLVTAIR SVRAEMNITP STLTPLVLAG ASAETRDRAQ
RWSDVVKRMA RLGEISFADS APQGAVQLLI RGEVAALPLK GVIDVAAEQA RLDKELAKAE
ADIKRVDAKL SNEKFVANAP EEIVEEEKEK REAAVARKAK ILEALERLKN AT
|
|---|
| |