| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2352 |
|---|
| Symbol | |
|---|
| ID | 3969063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2555143 |
|---|
| End bp | 2556417 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637925459 |
|---|
| Product | acetylornithine deacetylase |
|---|
| Protein accession | YP_532224 |
|---|
| Protein GI | 90423854 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01910] acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.737535 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.411266 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACGACG ATCACCGCCG CATTCTTGAT GCCGTCGACG CGGGCTTCGA CGCCCAGCTC
GCCACCACGC GCGATTTCGT CGCGATCCCG AGCACGCGAG GCGCCGAAGC GCCGTGCCAG
GACATGATGG CGGATCTGTT GCGGCAGCGC GGCTACGAGG TCGACGACTG GCACATCGAC
GTCGAGGATC TGAAGGAGAT GCGCGGCTTC GGCCCGATCG AGCACGATTT CTCCAAAGCC
CGCAGCGTGG TCGGGACCTA TCGGCCGGCG CGCCATGCCG GGCAGTCGCT GATTCTGCAG
GGCCATTGCG ACGTGGTGCC GGCGGGGCCG GTGGAGATGT GGGACACCCC GCCATTCGAC
CCGGTGGTGA AGGACGGCAA GCTGTTCGGC CGCGGCGCCT GCGACATGAA GTCGGGCACC
ATCGGCGCGC TCTATGCGCT CGATGCGATC AAGGCCGCGG GCTTGAAACC CACCGCGCGG
ATTCACTTTC AATCGGTGAT CGAGGAGGAG AGCACCGGGC TCGGTGCGCT CTCCACGCTG
CAACGCGGCT ACCGCGCCGA CGCCTGCTTC ATTCCGGAGC CCACCTTCGG CAAGATGGTG
CGCTCGCAGG TCGGCGTGAT CTGGTTTCGA TTGAAAGTGC GCGGCCTGCC GGTGCACGTC
TACGAGGCCG GCGCCGGCGC CAATGCGATC AATGCGGCGT ATCATCTGAT TCAGGCGTTG
GAGAAACTGG AGGCGGCGTG GAACGAACGC GCCGCGTCCG ATCGGCATTT CGGCAACGTC
GCCCATCCGA TCAATTTCAA TCCCGGCATC ATCAAGGGCG GCGACTGGGC GTCCAGCGTG
CCGGCGTGGT GCGACGTCGA TTGCCGGATC GCGATCCTGC CGGGCTGGTC GGTGGCCGAG
CATCAGGCCG AGATCGTGGC CTGCGTGGCG GCGGCGGCGC GCGACCATCG CTTCCTGTCG
AACAATCCGC CGGTCGTGCA ATGGACCGGC TTCCTCTCCG AAGGTTACGA GCTGAAAGAC
TCCGCGGCGC CGGAAGCGGC GTTCGGCAAG GCTTACGCCG CGGTCTATGG CGGCAGCGTG
CCGGACATGT CGTTCACCGC GCTGACCGAC ACCCGCTTCT ATGGGTTGAA CTACGACATC
CCGAGCCTGT GCTTCGGCGC CAGCGGCGGC GCGATGCACG GCTTCAACGA ATTCGTCGAT
CTGGATTCGT TGCGGCAATC CACCAAGGCC ACCGCGCTGT TCATCGCCGA ATGGTGCGGC
GTGGAAGCCG TCTAG
|
|---|
| Protein sequence | MNDDHRRILD AVDAGFDAQL ATTRDFVAIP STRGAEAPCQ DMMADLLRQR GYEVDDWHID
VEDLKEMRGF GPIEHDFSKA RSVVGTYRPA RHAGQSLILQ GHCDVVPAGP VEMWDTPPFD
PVVKDGKLFG RGACDMKSGT IGALYALDAI KAAGLKPTAR IHFQSVIEEE STGLGALSTL
QRGYRADACF IPEPTFGKMV RSQVGVIWFR LKVRGLPVHV YEAGAGANAI NAAYHLIQAL
EKLEAAWNER AASDRHFGNV AHPINFNPGI IKGGDWASSV PAWCDVDCRI AILPGWSVAE
HQAEIVACVA AAARDHRFLS NNPPVVQWTG FLSEGYELKD SAAPEAAFGK AYAAVYGGSV
PDMSFTALTD TRFYGLNYDI PSLCFGASGG AMHGFNEFVD LDSLRQSTKA TALFIAEWCG
VEAV
|
|---|
| |