| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1902 |
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| Symbol | |
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| ID | 3973458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2072750 |
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| End bp | 2073979 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637925013 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_531778 |
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| Protein GI | 90423408 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.555792 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCGT CCGCCACCGT CCCGCCATCG CATCGTATTC GCAGAACCAT CGCAGGCCTG
GCGATTGCCG GCGCCGCCAT CCTCGGCGGC TCGGTGATCG CCGACCGCTA TTTCCATGTT
GAGCAGGCCA CCGCGAGCTC ACCGCCCCCT GAGCAAGCCG TCCCCGTGAC GGTCGCGGTG
GTGCAGCCTC GCCAGGCCAC GCTGTGGGAC GATTTCTCCG GGCGGCTCGA AGCGGTGAAC
CGCGTCGAGC TGCGACCGCG GGTCGCCGGC GCTATTCTGA CGACGCATTT CACCGAGGGC
GCGCTGGTCA AGGCCGGCGA CGTGCTGTTC CAGATCGATC CGGCGCCCTA TGCGGCCGAG
GTCGACAAGG CGCAGGCCCA GCTCGAGGCG GCGAAAGCCC GCGCGCTGTT CGCCGCAGGC
GAACTCGAGC GCGGCCGCCA GCTGGTCGGC AACAATATCG TGACCCGGCG CGACTTCGAG
CAGCGCGACA ATGCCAGCCG CGAAGCCATC GCCAATGTGG CCGCCGCCGA GGCGACGCTG
CAATCGGCCA GGCTCAATCT GGATTACACC AGGGTCCGCG CGCCGGTCGC CGGCCGGGTC
GGCAAGATCG AAGTCACCGT CGGCAACCTG GTCGCCGCCG GCACCTCGTC TCCGGTACTG
ACCTCGCTGG TCTCGGTCAA TCCGATCTAT GCCAGTTTCG ACGCCGACGA GGACGTGGTG
ATCCGCGCGC TGAACTCGGT CGGCGGCGCC TCCGGCAAGC TCGACCGTAT TCCGGTCGAG
ATGTCGACGT CGACTTCCGC CAGCGAGACC GCGAAGGGCC ACATCCAGCT GATCGACAAT
CAGGTCAACG GCCAGAGCGG CACCATCCGG GTCCGCGCCG CGTTCGACAA CGCCGACGGT
CGATTGATCC CCGGCCAGTT CGCGCGGCTG CGGATGGGGC ATCCGCAACA GCAGACGCTG
GTGATGCTGG AGGAGCGCGC GATCGGCACC GACCAGGACA AGAAGTTCGT GATGGTGGTC
GGCAACGACA ACCGCGCGCT GTACCGCGCG ATCACGCTCG GCGGCAATGT CGAGGGGCTG
CGGATCGTCA CCTCGGGCCT GCAGTCCGGC GATCGGGTGG TGGTCAACGG CCTGCAACGG
GTGCGCCCCG GCGCGCTGGT GAAGACCGAA GTCGCCGACG CCGGCGGCTC GCAAGCCGCC
GACAGCGCCC GCCATCTCGC GCAGCGCTGA
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| Protein sequence | MTPSATVPPS HRIRRTIAGL AIAGAAILGG SVIADRYFHV EQATASSPPP EQAVPVTVAV
VQPRQATLWD DFSGRLEAVN RVELRPRVAG AILTTHFTEG ALVKAGDVLF QIDPAPYAAE
VDKAQAQLEA AKARALFAAG ELERGRQLVG NNIVTRRDFE QRDNASREAI ANVAAAEATL
QSARLNLDYT RVRAPVAGRV GKIEVTVGNL VAAGTSSPVL TSLVSVNPIY ASFDADEDVV
IRALNSVGGA SGKLDRIPVE MSTSTSASET AKGHIQLIDN QVNGQSGTIR VRAAFDNADG
RLIPGQFARL RMGHPQQQTL VMLEERAIGT DQDKKFVMVV GNDNRALYRA ITLGGNVEGL
RIVTSGLQSG DRVVVNGLQR VRPGALVKTE VADAGGSQAA DSARHLAQR
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