| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1836 |
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| Symbol | |
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| ID | 3971716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1990730 |
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| End bp | 1992712 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637924949 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_531714 |
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| Protein GI | 90423344 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0373548 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.935873 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCCG AGGCCGGGCA CTATGCGCTG GTGCTGGCGC TCGGGCTGGC GCTGATCCAG
GCCAGCGTGC CGGTGCTCGG CGCGCGGCTG CGCGATCCCG CCTTGATGAA CGTCGCGCGT
TCCGCGGCGC TGGCGCAACT GCTGTTCGTC GGCCTCTCGT TCACCGCGCT GGTGTACCTG
TACGTCATCT CGGATTTCTC CGTCGCCAAC GTGTTCGAGA ATTCGCATTC CGCCAAGCCG
CTGCTCTACA AGATCACCGG CGTGTGGGGC AATCACGAAG GCTCGATGCT GCTGTGGGTG
TCGATCCTGG CCTTGTTCGG CGGCCTGGTC GCCGCCTTCG GCAACAACCT GCCGCTGAGC
TTGCGCGCCC ACGTGCTGGC GGTGCAGGCC TGGATCGCCA CCGCGTTCTA TCTGTTCATC
CTGATTACTT CCAACCCGTT CCTGCGTCTC GACGACCCGC CGATCGAGGG CCGCGATCTC
AATCCGGTGC TGCAGGACAT CGGGCTCGCG ATCCATCCGC CGATGCTCTA TCTCGGCTAT
GTCGGGTTCT CGATCTCGTT CTCCTTCGCC ATCGCCGCCT TGATCGAAGG CCGCGTCGAC
GCCGCCTGGG CGCGCTGGGT GCGGCCGTGG ACGCTGATGG CGTGGATCTT CCTCACCCTC
GGCATCGCGA TGGGCTCGTA TTGGGCCTAT TACGAACTCG GCTGGGGCGG CTGGTGGTTC
TGGGACCCGG TCGAGAACGC CTCGCTGATG CCATGGCTGG CCGGCACCGC GCTGTTGCAT
TCCGCCGTGG TGATGGAGAA GCGCAACGCG CTGAAGGTCT GGACCATCCT GCTGTCGATC
CTGACCTTCT CGCTGTCGCT GCTCGGCACC TTCCTGGTGC GCTCCGGCGT GTTGACCTCG
GTGCACGCCT TCGCCACCGA TCCGACCCGC GGCGTGTTCA TCCTGCTGAT CCTGTGCGTG
TTCATCGGCG GCAGCCTGTC GCTGTATGCC TCGCGCGCCT CCAGTCTGAA GCAGGGCGGG
CTGTTCGCGC CGATCTCGCG CGAAGGCGCG CTGGTACTCA ACAATCTGTT CCTCACCACC
GCCTGCGCCA CGGTGTTCAT CGGCACGCTG TATCCGCTGG CGCTGGAAGT GCTGACCGGC
GACAAGATCT CGGTTGGCGC GCCGTTCTTC AATCTCACCT TCGGGCCGCT GTTCGTGCCG
CTGCTGCTGG CGGTGCCGTT CGGCCCCTTG CTGGCGTGGA AACGCGGCGA TCTGATCGGC
GCGGCGCAGC GGCTGATTGC CGCCGGCGTT GCCGCCTTGA TCGCGATCGC GCTGCTGTGG
TCCTTCGTGC ATGGCGGCAG CACGCTGGCG CCGCTGGCGA TCGGGCTGGC CGTGTTCGTG
ATCGCCGGAG CCTTGGTCGA TCTGGTCGAG CGCATCGGCC TGTTCCGCAA TCCGCTCGGC
ATCGTGTGGC GCCGCGCGCG AGGCCTGCCG CGCTCGACCT GGGGCACCGC CTTCGCCCAT
GCCGGTGTCG GCGTGGCGCT GATCGGGATC GTCTGCGAGA CCACCTGGAA TAGCGAATAT
ATCGGCACCA TGAGCGCCGG GCAGAGCGCC AAGCTCGCCG GCTACGAGTT GAAGCTCGAC
GGCCTGCAGT CGCGGCAGGG ACCGAATTTC CGTGAGCTGC TGGCGCAGTT CACCGTCACC
GAGGCGGGTC TGCCGATCGG GGTGATGAAC CCGTCGAAGC GCGCCTTCGC CGCGCGCGGC
TCCTCCACCT CGGAGGCAGC GCTGCTGACC CGCGGCGTCA GCCAGCTCTA CGTCTCGCTC
GGCGAGCCCA CCGCCGACGG CGGCATCGCG GTGCGGATCT ATCACAAGCC GATGGTGCTG
TTGATCTGGT TCGGGCCGCT GTTGATGGCG TTCGGCGGGT TGCTGTCGCT TTCGGACCGG
CGGCTGCGGG TCGGTGCGCC GAAGCCGGCG CGACAAGCGC GCGGCTTGCA GGCGGCGGAG
TGA
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| Protein sequence | MIAEAGHYAL VLALGLALIQ ASVPVLGARL RDPALMNVAR SAALAQLLFV GLSFTALVYL
YVISDFSVAN VFENSHSAKP LLYKITGVWG NHEGSMLLWV SILALFGGLV AAFGNNLPLS
LRAHVLAVQA WIATAFYLFI LITSNPFLRL DDPPIEGRDL NPVLQDIGLA IHPPMLYLGY
VGFSISFSFA IAALIEGRVD AAWARWVRPW TLMAWIFLTL GIAMGSYWAY YELGWGGWWF
WDPVENASLM PWLAGTALLH SAVVMEKRNA LKVWTILLSI LTFSLSLLGT FLVRSGVLTS
VHAFATDPTR GVFILLILCV FIGGSLSLYA SRASSLKQGG LFAPISREGA LVLNNLFLTT
ACATVFIGTL YPLALEVLTG DKISVGAPFF NLTFGPLFVP LLLAVPFGPL LAWKRGDLIG
AAQRLIAAGV AALIAIALLW SFVHGGSTLA PLAIGLAVFV IAGALVDLVE RIGLFRNPLG
IVWRRARGLP RSTWGTAFAH AGVGVALIGI VCETTWNSEY IGTMSAGQSA KLAGYELKLD
GLQSRQGPNF RELLAQFTVT EAGLPIGVMN PSKRAFAARG SSTSEAALLT RGVSQLYVSL
GEPTADGGIA VRIYHKPMVL LIWFGPLLMA FGGLLSLSDR RLRVGAPKPA RQARGLQAAE
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