18 homologs were found in PanDaTox collection
for query gene RPC_1319 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007925  RPC_1319  photosynthetic reaction center subunit H  100 
 
 		 255 aa  504  9.999999999999999e-143  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.474837  normal  0.244306 
 
 
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NC_007958  RPD_3730  photosynthetic reaction center subunit H  74.22 
 
 		 254 aa  368  1e-101  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0219155  hitchhiker  0.00401595 
 
 
-
 
NC_007778  RPB_3975  photosynthetic reaction centre, H-chain  71.48 
 
 		 254 aa  361  8e-99  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0176232  normal  0.276586 
 
 
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NC_011004  Rpal_1736  photosynthetic reaction center H subunit  71.21 
 
 		 255 aa  335  5.999999999999999e-91  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_6411  reaction center protein H chain (photosynthetic reaction center H subunit)  60.78 
 
 		 260 aa  304  1.0000000000000001e-81  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
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NC_010511  M446_3724  photosynthetic reaction center subunit H  52.36 
 
 		 261 aa  234  1.0000000000000001e-60  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.055841 
 
 
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NC_011666  Msil_2036  photosynthetic reaction center H subunit  52.33 
 
 		 253 aa  227  2e-58  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_011757  Mchl_5277  photosynthetic reaction center H subunit  48.02 
 
 		 257 aa  216  2e-55  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_4810  photosynthetic reaction center subunit H  48.02 
 
 		 257 aa  216  2.9999999999999998e-55  Methylobacterium extorquens PA1  Bacteria  normal  0.54526  normal  0.0831803 
 
 
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NC_008789  Hhal_1631  photosynthetic reaction center subunit H  48.15 
 
 		 278 aa  216  2.9999999999999998e-55  Halorhodospira halophila SL1  Bacteria  normal  0.768314  n/a   
 
 
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NC_010725  Mpop_5355  photosynthetic reaction center H subunit  46.88 
 
 		 257 aa  216  4e-55  Methylobacterium populi BJ001  Bacteria  normal  0.356568  normal  1 
 
 
-
 
NC_007643  Rru_A0617  photosynthetic reaction center, H-chain  46.56 
 
 		 257 aa  213  1.9999999999999998e-54  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.110547  n/a   
 
 
-
 
NC_010505  Mrad2831_1842  photosynthetic reaction center subunit H  46.85 
 
 		 259 aa  210  2e-53  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.0733944 
 
 
-
 
NC_009952  Dshi_3540  reaction center protein H chain  40.8 
 
 		 256 aa  174  9.999999999999999e-43  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_1004  photosynthetic reaction center subunit H  41.04 
 
 		 260 aa  164  9e-40  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.61506 
 
 
-
 
NC_009049  Rsph17029_1934  photosynthetic reaction center subunit H  40.96 
 
 		 260 aa  164  1.0000000000000001e-39  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_0291  reaction centre H protein  40.96 
 
 		 260 aa  164  1.0000000000000001e-39  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.152025  n/a   
 
 
-
 
NC_007802  Jann_0155  photosynthetic reaction center subunit H  36.96 
 
 		 260 aa  164  2.0000000000000002e-39  Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
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