| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1190 |
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| Symbol | |
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| ID | 3969145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1300062 |
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| End bp | 1303235 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637924301 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_531072 |
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| Protein GI | 90422702 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0696515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTCCG ATCTGTTCAT CGACCGGCCG CGGCTGGCCG TCGTCGTCGC CCTGGTCACC
ACGCTGGTCG GCGGACTGGC GATGTTGCGG ATTCCGGTGT CGCAATTGCC CGACATCGTG
CCGCCGCAGG TCCGGGTCTC GACCAACTTC CCCGGCGCGT CCGCGGAAGT GCTGGAATCC
ACCGTCGCGC AGCCGATCGA GGCCAAAGTC GTCGGCGTCG ACAAGATGCT CTACATGAAG
AGCTCGAGCG GCAACGATGG CTCCTACACG CTCGACGTCT CGTTCGCGCT CGGCAGCAAT
CCCGACATCA ACACCGTCAA CGTCAACAAC CGGGTGCAGA ACGCGTTGTC GCAGCTGCCG
GCAGAGGTGC GGCTGCAGGG CGTGGCCGTG CAGAAGCGCT CGTCGTCGAT GCTGCAGGTC
GTCGACATGT CGAGCAAGGG CGGCAAATAC GACCCGGTGT TTCTGACCAA TTACGGTCTG
ATCAACGTGG TGGACGAACT CGCCCGCGTC CCCGGCGTCG GCGAGGCGAC GTTGTTCGGC
CGGCTCAACT ATTCGATGCG GATCTGGTTC GACATCGAGC GGCTGTCCAG CCTCGGCATG
GTGCCGTCGG ACGTGGTGGC GGCGATCAGC GCGCAGAACG TCCAGGCGCC GGTCGGCCGG
ATCGGCGCGC AGCCGGTGCC GGACGATCAG AAATTCCAGA TCAATCTGCA GACCCAGGGC
CGGCTGACCA AGCCGGAGGA ATTCGGCGCC ATCGTGCTGC GCGCCAACGC CGACGGCTCG
GTGCTGCGGG TCAGTGACGT CGCTCGCGTC GAGCTCGGCG CGCTGAGCGA GGACACCCAC
GCCCGGCTCA ACGGCGATCC GACGGTCGGC ATCGGCATCT TCCAGGCGCC CGGCGCCAAT
GCCATCAACA CCGCGACCGC GGTCAGGGCC AAGCTCGACG AGTTGCGGCA GCGCTTTCCC
GACGGCGTGC AGGCGCGCGT GGTGTTCGAC TCCACGGTGT TCGTCAACGA CACCATCAAG
GCGGTGATGC ACACGCTGCT CGAAGCCTTC GCGCTGGTCG CATTGGTGGT GTTCCTGTTC
CTCGGCAATC TGCGCGCCAC GCTGATTCCG ATCATCGCGG TGCCGGTCAG CCTGATCGGC
ACCTTCGCGG TGCTGCTGGC GCTCGGCGCC TCGGTCAACA CGGTGTCGCT GCTGGCTTTG
GTGCTCGCCA TCGGCATCGT GGTCGACGAC GCCATCGTGG TGGTGGAGAA CGTCGAACGG
GTGATGGAGG AGGAGCCGGA GCTGTCTCCC GCCGACGCCA CTAAGAAGGC GATGAACCAG
GTCACCGCGC CGATCATCGC CATCACGCTG GTGCTGTTGT CGGTGTTCGT GCCGATCGGC
TTTCTGCCCG GCATCATGGG CGAGTTGTTC CGGCAATTCG CCATCACCAT CAGCGCCGCG
ATGCTGATCT CCGCGATCAA CGCGCTGACG CTGTCGCCGG CGCTCTGCGC GGTGTTCCTG
CGCCACGGCG GGCCGCGCCG CGGCGTGATG CATTGGATCG GACGGCGCAT CGACGGCGCC
CGCGACCGCT ATGCCGGCGC GGTGCGGATC GCGCTGCACC GCCCGGCGCT GTCGATCCTG
ATCGTGATCG GCTGCGGCCT CGGCATCGCC GCGCTCAACG GCACCACGCC GAGCGGCTTC
CTGCCGGAAG AAGATCAGGG CGCGTTCTTC ATCAACGTGC AATTGCCCGA CGGCGCCTCG
GTGGCGCGCA CCGAAGAAAC CGTGATCGCG GTGGAAAACA TCGTCAAGAC CATGCCGCAG
GTCCGCGACG TGCTGTCGAT CGTCGGATTG TCGCTGCTCG ACAATTATTC CGCCAGCAAC
AATGCCTTCA TGATCGTGCA ATTGAAGCCG TTCGAGGACC GCCGCGCCGC CTCCTCGTCG
GCGCAGACGC TGATCGCCAA GACCTTCGGC GCCGTGCAGC AGGTCCGCAC CGCGACGGTG
CTGCCGTTCA ACCTGCCGCC GGTGATCGGG TTGTCGACCG CCGGCGGCTT CCAGTATCAG
CTGGAATCGC TGGAAGGCGC CGAGCCCGCG GCGTTGGGCA GCGTCACCAA CGGGCTGCTC
GCCGCCGGCA ATCAGCACCC GCAGCTGACC CGGGTGTTCA GCACCTATGG CGCCAACGCG
CCGTCCTACT ATCTCGATAT CGACCGCGAG AAGGCGCAGT CGCTCGGCGT CACCATCAAC
GACATCTTCT CCGCGCTGCA AATCACGCTC GGCGGGCTCT ACATCAACAA CTTCAACATG
TTCGGCCGCA CCTGGCAGGT CAACCTGCAG GGCGACGCGG AAGGCCGCCG CGACCTGCCG
GCGCTGTGGG ACATCTACGT CCGCAACGCC AAGGGCACCA TGGTGCCGCT GCAGTCGATC
GCGTCGGTGC GCAGCGTCAC CGGGCCCGCG GTGATCACCC GCTACAACAA TTATCGCTCA
GTCACCATCA ACGGTTCGCC GGCGGCCGGC GTGTCCTCGG GCGCCGCGAT GGCGGCGATG
GCGGAAGTGT CGCAGAAGAC GCTGCCGCCG GGCTACGCCT TCGAGTGGAC CGGCACCGCC
TATCAGGAGC ACGAGGCGGT CGGCAAGACC GGCTACATCC TCGGGCTGGC GCTGTTGTTC
GCCTATCTGT TCCTGGTGGC GCTGTATGAG AGCTGGGTGA TTCCGATCCC GGTGCTGCTG
TCGGTGTCGA TCGCGGTGCT CGGCGCCTTC GTCGGCGTGC TGATCGCCGG CGTCACGCTG
GATCTCTACG CCCAGATCGG CCTCGTCGTG CTGATCGCGC TGTCGGCCAA GAACGGCATC
CTGATCGTCG AATTCGCCAA GGAACAGCGC GAGGCCGGGC TGTCGATCAC CGAGGCCGCG
GTGCTCGGCG CCCGCTTGCG ATTCCGCGCG GTGATGATGA CCTCGATCGC TTTCATCTTG
GGGCTGGTGC CGCTGGTCTG GGCCGACGGC GCGGCGATGC TGGCGCGGCG CAATCTGTCG
ACGCCGGTGT TCGCCGGGAT GCTGACCGCC AGTCTATTGG GCATCCTGTT GATCCCGATG
CTCTACGTCG TGTTCCAGTC GATGCGGGAG TCGGTTGCCG GCAATGGCCG GCTCGGCGCG
TGGGCGGCGA GCCACCTGCC GCACTGGGCA CGCTCGTTCG GCAAACGATC GTAA
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| Protein sequence | MISDLFIDRP RLAVVVALVT TLVGGLAMLR IPVSQLPDIV PPQVRVSTNF PGASAEVLES
TVAQPIEAKV VGVDKMLYMK SSSGNDGSYT LDVSFALGSN PDINTVNVNN RVQNALSQLP
AEVRLQGVAV QKRSSSMLQV VDMSSKGGKY DPVFLTNYGL INVVDELARV PGVGEATLFG
RLNYSMRIWF DIERLSSLGM VPSDVVAAIS AQNVQAPVGR IGAQPVPDDQ KFQINLQTQG
RLTKPEEFGA IVLRANADGS VLRVSDVARV ELGALSEDTH ARLNGDPTVG IGIFQAPGAN
AINTATAVRA KLDELRQRFP DGVQARVVFD STVFVNDTIK AVMHTLLEAF ALVALVVFLF
LGNLRATLIP IIAVPVSLIG TFAVLLALGA SVNTVSLLAL VLAIGIVVDD AIVVVENVER
VMEEEPELSP ADATKKAMNQ VTAPIIAITL VLLSVFVPIG FLPGIMGELF RQFAITISAA
MLISAINALT LSPALCAVFL RHGGPRRGVM HWIGRRIDGA RDRYAGAVRI ALHRPALSIL
IVIGCGLGIA ALNGTTPSGF LPEEDQGAFF INVQLPDGAS VARTEETVIA VENIVKTMPQ
VRDVLSIVGL SLLDNYSASN NAFMIVQLKP FEDRRAASSS AQTLIAKTFG AVQQVRTATV
LPFNLPPVIG LSTAGGFQYQ LESLEGAEPA ALGSVTNGLL AAGNQHPQLT RVFSTYGANA
PSYYLDIDRE KAQSLGVTIN DIFSALQITL GGLYINNFNM FGRTWQVNLQ GDAEGRRDLP
ALWDIYVRNA KGTMVPLQSI ASVRSVTGPA VITRYNNYRS VTINGSPAAG VSSGAAMAAM
AEVSQKTLPP GYAFEWTGTA YQEHEAVGKT GYILGLALLF AYLFLVALYE SWVIPIPVLL
SVSIAVLGAF VGVLIAGVTL DLYAQIGLVV LIALSAKNGI LIVEFAKEQR EAGLSITEAA
VLGARLRFRA VMMTSIAFIL GLVPLVWADG AAMLARRNLS TPVFAGMLTA SLLGILLIPM
LYVVFQSMRE SVAGNGRLGA WAASHLPHWA RSFGKRS
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