| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1142 |
|---|
| Symbol | |
|---|
| ID | 3969537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1241910 |
|---|
| End bp | 1242998 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637924252 |
|---|
| Product | chorismate synthase |
|---|
| Protein accession | YP_531024 |
|---|
| Protein GI | 90422654 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0082] Chorismate synthase |
|---|
| TIGRFAM ID | [TIGR00033] chorismate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.579597 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.271094 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTCA ACACCTTCGG CCACATGTTT CGCGTCACCA CCTTCGGCGA GAGCCATGGC
GTGGCGATCG GCTGCGTGGT CGACGGCTGT CCGCCCTTGA TCGCGCTTAC CGAGGCCGAC
ATCCAGCGCG ACCTCGACCG CAGGCGGCCG GGGCAGTCGC GCTTCACCAC CCAGCGCCAG
GAAGCCGACC AGGTGAAGAT CCTGTCCGGG GTGATGGTGC ATCCGCAGAG CGGCTTGCAG
GTCACCACCG GCGCGCCGAT CGCGCTCTTG ATCGAGAACA CCGACCAGCG CTCGAAAGAC
TATTCCGAGA TCAAGGACAA GTTTCGCCCC GGCCACGCCG ACTTCACCTA TGAGGCGAAA
TACGGCATCC GCGATTATCG CGGCGGCGGC CGTTCCTCGG CGCGCGAGAC CGCGACCCGC
GTCGCCGCCG GTGCGATCGC CCGCAAAGTG GTGCCCGGCA TCACCGTGCG CGCCGCTTTG
GTGCAGATGG GGCCGCACCA GATCGACCGC GACAACTGGG ATTGGGAGGA GGTCGGCAAC
AATCCGTTCT TCTGCCCGGA CAAGGACAAG GCGAAATTCT TCGAGGACTA TCTCGACGGC
ATCCGCAAGA ACGGCTCCTC GATCGGCGCG GTGATCGAGG TGGTCGCCGA CGGCGTGCCG
GCGGGGTGGG GCGCGCCGAT CTACGCCAAG CTCGACACCG ACATCGCCGC GGCGCTGATG
AGCATCAACG CGGTGAAGGG CGTCGAGATC GGCGACGGCT TCGCCACCGC AGCACTCACC
GGCGAGCAGA ACGCCGACGA AATGCGCGCC GGCAATGATG GCCCGAGCTT CCTGTCGAAC
CACGCCGGCG GCATTTTGGG CGGCATCTCC ACCGGGCAGC CGGTGGTGGC GCGGTTTGCG
GTGAAGCCGA CCTCCTCGAT CCTGGCGCCG CGCAAGACCG TGGATCGCGA CGGCCACGAC
ACCGACATTC TCACCAAGGG CCGCCACGAC CCCTGCGTCG GCATCCGCGC GGTGTCGGTG
GCCGAAGCCA TGGTCGCCTG CGTGCTCGCC GATCACCTGA TCCGCCACCG CGGCCAGATC
GGCGGGTAG
|
|---|
| Protein sequence | MSFNTFGHMF RVTTFGESHG VAIGCVVDGC PPLIALTEAD IQRDLDRRRP GQSRFTTQRQ
EADQVKILSG VMVHPQSGLQ VTTGAPIALL IENTDQRSKD YSEIKDKFRP GHADFTYEAK
YGIRDYRGGG RSSARETATR VAAGAIARKV VPGITVRAAL VQMGPHQIDR DNWDWEEVGN
NPFFCPDKDK AKFFEDYLDG IRKNGSSIGA VIEVVADGVP AGWGAPIYAK LDTDIAAALM
SINAVKGVEI GDGFATAALT GEQNADEMRA GNDGPSFLSN HAGGILGGIS TGQPVVARFA
VKPTSSILAP RKTVDRDGHD TDILTKGRHD PCVGIRAVSV AEAMVACVLA DHLIRHRGQI
GG
|
|---|
| |