| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1034 |
|---|
| Symbol | |
|---|
| ID | 3969644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1133857 |
|---|
| End bp | 1135008 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637924146 |
|---|
| Product | acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_530918 |
|---|
| Protein GI | 90422548 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | [TIGR03207] cyclohexanecarboxyl-CoA dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCCTT ATCTCAATGA AGACCTGGTT GCGCTGGCCG ATCAGGCCCG GCGATTTGCC
ATCGATCGCA TCGCGCCCGG ATTTCAGGAG CGCGACAAAA CGCGCGTTCT TGACCGCGGC
GTGATGAAGG CGATGGGTGA GATGGGATTT ATCGCTCCAG AGCTGCCGGA AGTGTTCGGC
GGTCTCGGCA TGGGCAGCCT CGCCGCCGGC GTCATCCATG AGGAGGTCGC GCGCGCCGAT
CTCAGCATCT CCTACATCAA TCTGCTGGCC TCACTGAACG GACAGATTTT GTCCCAGCAC
GGCCGGCCCG AGATCGCCAA GCCTTGGCTT ACGAGGCTGC TGGCTGGCGA TGCGCTGATC
GCGATCGCGC TCACCGAGCC TCGCGGCGGG TCGGACGCCG CCAATCTGCG GCTGCGCGTC
GAGCGCGACG GCGATAACTA TATCGTCAAT GGCGAGAAGA CCTCGATCTC CGCCGCCGAC
CAGGCCGACG CCGCGGTGGT GTTCGGGCGC ACAGGAACAG TTGAGTCCGG CGCGCATGGT
GTCACGGCGC TGCTGATTCC GATGGACCTG CCGGGGATTA CCCGCAGCCG GTTCGACTGC
CATGGCCAGC GCGCCATCGG CCGCGGCTCG CTGTTCTTCG AAAACGTCCG CGTACCCGGC
TCGCATCGCC TCGGCGATGA GAACAAGGGC TTCGTGCAGG TGATGCAGGG GTTCGATTTC
TCGCGCGCGC TGATCGGGAT GCAGGTGCTG GCGGTGGCGC GGGTCGCGCT CGAGGAAACC
TGGGCCCATG TCGCGGAGCG GCAGGCGTTC GGTCAGCCGT TGTCGGCGTT CCAGGGCGTG
TCGCATCCGC TCGCCGATCT CGACACCCAG GTCGAAGCCG CGCGTCTGCT GTGCCTGCAG
GCGCTGTGGC TGAAGGACAA CGGCGCGCCA CACAGCAGAG AAGCTGCGAT GTGCAAATGG
TGGGCGCCGA AACTCGCCTA CGACGTCGTG CATGAGTGCC TGCTGACGCA CGGCCATGGC
GGGTACGATC GCGGCGTGAT GGAGCAGCGC TTGCGCGACG TGCTCGGCTT CCAACTCGGC
GACGGCACCG CCCAGATCAT GAAGACCGTC ATCGCGCGCA GCCGGGCCGG CCGCGCCGCC
GTTCCGGCGT GA
|
|---|
| Protein sequence | MNPYLNEDLV ALADQARRFA IDRIAPGFQE RDKTRVLDRG VMKAMGEMGF IAPELPEVFG
GLGMGSLAAG VIHEEVARAD LSISYINLLA SLNGQILSQH GRPEIAKPWL TRLLAGDALI
AIALTEPRGG SDAANLRLRV ERDGDNYIVN GEKTSISAAD QADAAVVFGR TGTVESGAHG
VTALLIPMDL PGITRSRFDC HGQRAIGRGS LFFENVRVPG SHRLGDENKG FVQVMQGFDF
SRALIGMQVL AVARVALEET WAHVAERQAF GQPLSAFQGV SHPLADLDTQ VEAARLLCLQ
ALWLKDNGAP HSREAAMCKW WAPKLAYDVV HECLLTHGHG GYDRGVMEQR LRDVLGFQLG
DGTAQIMKTV IARSRAGRAA VPA
|
|---|
| |