| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0971 |
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| Symbol | |
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| ID | 3969695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1066325 |
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| End bp | 1068433 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637924087 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_530860 |
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| Protein GI | 90422490 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0743249 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00275822 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCACCA AGGCAAAGAC GCTGCAGACC AAGGACACCA AGGACGACAA GGTCGTCGAC
GCGCCGGAAA AGGATGCTCC GGACGCGCCG TCGCCGTTGC TCGACCTCTC CGACGCAGCC
GTCAAGAAGA TGATCAAGCA GGCCAAGAAG CGCGGCTTCG TCACCTTCGA TCAGCTCAAT
GAAGTGCTGC CGTCCGACAC CACCTCGCCG GAGCAGATCG AGGACATCAT GTCGATGCTC
TCCGACATGG GCATCAACGT GTCGGAAGCC GACGATGCCG ACAGCGACGA AGAGGACGCC
AAGGAAGAGG CCGAGGAAGA GCCCGACAAC GAACTGGTCG AGGTCACCGC CAAGGCCGTC
ACCGAGACCA AGAAGTCCGA GCCCGGCGAG CGCACCGACG ATCCGGTGCG GATGTACTTG
CGCGAAATGG GCACCGTCGA GCTGCTGTCG CGCGAGGGCG AAATCGCCAT CGCCAAGCGG
ATCGAGGCCG GCCGCGAGGC GATGATCGCA GGGCTCTGCG AAAGCCCGCT GACGTTCCAG
GCCATCATCA TCTGGCGCGA TGAATTGAAC GAGGGAAAGA TCTTCCTGCG CGACATCATC
GATCTGGAAG CCACCTATGC GGGTCCGGAC GCCAAGAACA ACATGAACCC GGCGCTGATC
GCGCCCCCCG CCGCCGCCGA TGGCGAGGCC GCCGACGGCG CCGAAGCCGT TGCAGCGCCT
CCGGCCGCGC CGCCCTCGGC GACCCCGTTC CGCGCCGCGC CGCCGCCGCG CCCGGCCGAC
GAGCCCAAGG AATCCTCGGA GTCCGCCGAT GGCGATGCCG ACGACGACGA GTTCGAAAAC
CAGATGTCGC TCGCCGCGAT CGAGGCCGAG CTGAAGCCGA AGGTGGTCGA GACCTTCGAC
AAGATCGCCG AGAACTACAA GAAGCTGCGC CGCCTGCAGG AGCAGGACAT CTCCAACCAG
CTGCAGAACG AGACGCTGTC GCCGGCGCAG GAGCGCAAAT ACAAGAAGCT CAAGGACGAG
ATCATCGTCG AGGTGAAGTC GCTGCGGCTG AACCAGGCGC GTATCGATTC GCTCGTGGAG
CAGCTCTACG ACATCAACAA GAAGCTGGTT TCGTTCGAAG GCCGCCTGCT GCGGCTCGGC
GACAGCCACG GCGTCGCCCG CGAAGATTTT CTGCGCAACT ACCAGGGCTC CGAGCTCGAT
CCGCGCTGGC TCAACCGGGT GTCGAAACTT TCCGCCAAGG GCTGGAAGAA TTTCGTCGCC
CACGAAAAGG ACCGCATCAA GGAGCTGCGC GGCGAGATCC AGTCGCTGGC CGCTCTCACC
GGGCTCGAGA TCGGCGAATT CCGCAAGATC GTGCACGGCG TGCAGAAGGG CGAGCGCGAG
GCGCGCCAGG CCAAGAAGGA AATGGTCGAG GCGAATTTGC GTCTCGTCAT CTCGATCGCG
AAAAAATACA CCAACCGCGG CCTGCAATTC CTCGACCTCA TTCAAGAGGG CAATATCGGC
CTGATGAAGG CGGTCGATAA GTTCGAATAT CGCCGCGGCT ACAAGTTCTC GACCTACGCC
ACCTGGTGGA TCCGGCAGGC GATCACCCGC TCGATCGCCG ACCAGGCCCG CACGATCCGC
ATTCCCGTGC ACATGATCGA GACCATCAAC AAGATCGTGC GCACCTCGCG GCAGATGCTG
AACGAGATCG GCCGCGAACC CACTCCCGAG GAATTGGCCG AAAAGCTCGG CATGCCGCTG
GAGAAGGTCC GCAAGGTCCT GAAGATCGCC AAGGAGCCGT TGTCGCTGGA GACCCCGGTC
GGCGACGAGG AGGATTCGCA TCTCGGCGAT TTCATCGAGG ACAAGAACGC GATCCTGCCG
ATCGACGCCG CGATCCAAAG CAACCTGCGC GAAACCACCA CGCGGGTGCT GGCGTCGCTG
ACACCGCGCG AAGAGCGCGT GCTGCGCATG CGCTTCGGCA TCGGCATGAA CACCGACCAC
ACGCTGGAAG AAGTCGGCCA GCAGTTCTCG GTGACCCGCG AACGCATCCG GCAGATCGAA
GCCAAGGCGC TGCGCAAGCT GAAGCATCCG AGCCGGTCGA GGAAGCTGCG GAGCTTCTTG
GATAACTAA
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| Protein sequence | MATKAKTLQT KDTKDDKVVD APEKDAPDAP SPLLDLSDAA VKKMIKQAKK RGFVTFDQLN
EVLPSDTTSP EQIEDIMSML SDMGINVSEA DDADSDEEDA KEEAEEEPDN ELVEVTAKAV
TETKKSEPGE RTDDPVRMYL REMGTVELLS REGEIAIAKR IEAGREAMIA GLCESPLTFQ
AIIIWRDELN EGKIFLRDII DLEATYAGPD AKNNMNPALI APPAAADGEA ADGAEAVAAP
PAAPPSATPF RAAPPPRPAD EPKESSESAD GDADDDEFEN QMSLAAIEAE LKPKVVETFD
KIAENYKKLR RLQEQDISNQ LQNETLSPAQ ERKYKKLKDE IIVEVKSLRL NQARIDSLVE
QLYDINKKLV SFEGRLLRLG DSHGVAREDF LRNYQGSELD PRWLNRVSKL SAKGWKNFVA
HEKDRIKELR GEIQSLAALT GLEIGEFRKI VHGVQKGERE ARQAKKEMVE ANLRLVISIA
KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY RRGYKFSTYA TWWIRQAITR SIADQARTIR
IPVHMIETIN KIVRTSRQML NEIGREPTPE ELAEKLGMPL EKVRKVLKIA KEPLSLETPV
GDEEDSHLGD FIEDKNAILP IDAAIQSNLR ETTTRVLASL TPREERVLRM RFGIGMNTDH
TLEEVGQQFS VTRERIRQIE AKALRKLKHP SRSRKLRSFL DN
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