| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0467 |
|---|
| Symbol | |
|---|
| ID | 3970229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 503723 |
|---|
| End bp | 504382 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637923583 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_530361 |
|---|
| Protein GI | 90421991 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.577769 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGTCG ACCTCGTCAT CTTCGATTGC GACGGCGTTC TGGTCGACAG CGAGATCATT
TCCTGCCGGG TCTTTGCGCA AGCGCTGACC CACAGCGGCT ATCCGATCAC CGCCGATCAG
GTGCACGACC GCTTTCTCGG CCGCTCCTCG CGGGAAACCC GGCGCGAGGT CGAGCGCGAG
CTTGGCCGGA TGCTGCCGGA CGATTTCCAT GCGCAATTGA ACGTCGAGCT ATTTCGCCAG
CTGGAAACCT CGCTCGAACC GATGCCGCAC ATCGCGCAGG CGCTCGACGC GCTGGCGCAG
CCTGTCTGCG TGGCGTCCAG CGGTCCGCCG CAGAAGATCG GCGTCAGCCT CAATCGGGTC
GGGCTCTACG ATCGTTTCGC GCCGCACATT TTCTCCGCCA CCCAGGTCGC CCGCGGCAAG
CCGGCGCCCG ACCTGTTTCT GTTCGCGGCG GCGCAGATGG GCGCGGACCC GGCGCGCTGC
CTGGTGATCG AGGACAGCGT TGCCGGCATC ACCGCCGCCC GCGCCGCCGG GATGGCCACG
CTGGGATTTG CCGGGGGCAG CCATTGCCGG CCCGGGCACG GCCAGACCTT GCGTCAGGCT
GGAGCCCGGG CGGCTTTTGA CGACATGCGC CAACTGACTG ATTTAATTGT GGAAATTTAG
|
|---|
| Protein sequence | MSVDLVIFDC DGVLVDSEII SCRVFAQALT HSGYPITADQ VHDRFLGRSS RETRREVERE
LGRMLPDDFH AQLNVELFRQ LETSLEPMPH IAQALDALAQ PVCVASSGPP QKIGVSLNRV
GLYDRFAPHI FSATQVARGK PAPDLFLFAA AQMGADPARC LVIEDSVAGI TAARAAGMAT
LGFAGGSHCR PGHGQTLRQA GARAAFDDMR QLTDLIVEI
|
|---|
| |