| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0283 |
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| Symbol | |
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| ID | 3971042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 300801 |
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| End bp | 302483 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637923397 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_530177 |
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| Protein GI | 90421807 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.140113 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGT CACACATCGG TTTCTACCGC AAAAAGGCGA AATTCAAAGG CATATTCGGG
ATTCGCGCGC GGCTGGTGCT GCTGGCGTTG ATCCTGGTCG GCCCGTTGAT GGTCGAGCGC
ATCCGGTCGT TGGAGGACAC CCGCGTCAAG CAGGTGTCGA TGGCGTCCAG CGAATTGTCG
GCGCTGGCCG AGCGCACCGC GGCGTCGCAG CGCGAGATCA TTTCCTCGGT CGAAGCGGTG
CTGAAATCCT CCGCCTATAT CCACGCCTCG GCGTCGCGAA TCGGCCGCGG CTGCGCCACC
TTGCGCGCCA GCCTGCGGGT CGACCTGCCG TCGATTCGCA TGCTGATGGT GGCCGGCCCC
GACGGCGTCG TGCGCTGTTC GACCTCGACG ATGTTTGTCG GCCTGAACAT CAGCGACCGC
AGCTATTTCA AGAAGGCGAT GGAGTCCCAT GATTTCGTGG TCAGCGATTT TCTGGTTGGC
CGACAGACCG GCAAGGGCAC CATTCTGGCG GCCTATCCGG TGTCGGCGAT CGACAGCGGC
GAAGAGGCGG TGCTGGTCGC CGGACTGAAC CTGGATTGGA TGTCGGGGGT GATGGGCAAC
CTCGGCGGCC GTCCCGGCGT CACCGCGGCG TTGGTCGACG GCGACGGCAT CGTGCTGGCG
ACCCCGCCCG ACCAGATGAG CCTGGTCGGC CAGCCGTTCG TCGGCCCGGC GCAGCCGGTC
AGTCCCGGCC TCAACGATCT CGGCGCCGAG GAACGGGCGT TCTCCGGCGA GGCGCCGGGC
AACAACCGCG CGGTGTATTT CGCGCCGATT CGCGGCACCA CCGCCCGGCT GGTGGTGGCG
GTTGACGAGG CCAAGGTCTC CGCCGGCATC AACCGCGACA TCCGCACCGC CTATCTGCAG
CTGTTTCTGG TCTGCTTCAT CGTGCTGCTC GGCGCCCTGA TCGCGGCGGA ACGGCTGATC
GTGAAGCCGG TCAATATGAT GACCGAGGTG GCGAAAAAAT TCGGCCAGGG CGACTGGTCG
GCCAGGGTCT GCCGCAAGCG GCTGCCGGCG GAATTCGTGC CGCTGGCGCG CGCCTTCAAC
GCCATGGCGG CGCATCTGGT CGAGCGCGAG CGCGGCCTGG TGGCGATCAA CAACCGCCTC
ACCGTGATGG CCTCGATCGA CGTGTTGTCC GGGCTCGCCA ACCGCCGCGG CTTCCAGAGC
CGGCTCGATT TCGAATGGAT GAAGGCCGAG CAGAACGGCA CCGATGTCGG GCTGTTGATG
ATCGACGTCG ACCATTTCAA GCCGTTCAAC GACACCTATG GCCACCCCGA AGGCGACGCC
TGCATCAGCC GGATCGGCGA AACCCTGGCG GCGATCGCCA ACGACATCGG CGGCTTTGCC
GCGCGTTATG GCGGCGAGGA ATTCTGTCTG CTGCTGGCGG AGACGGACCG CGCCTCCGAG
GTCGGCGAGA TGGTGCGCAG CGCCATCGCC CACCTCGCCA TTCCGCACCG CACCAGCGTC
TTCCAGCAGG TCACGGTCAG CGTCGGGGTG GCCTGCACCG TGCCGCACCC GGCGAATTCG
CCGCGCGACC TGATCGAAGC CGCCGACGCC GCGCTTTATG CCGCCAAGCA CCGCGGCCGC
AACGCCGTGG TCGAGCACGG CTTCATCCGC GGCTCGGATT CCGGGCTGTC GATGGCGAGC
TGA
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| Protein sequence | MTMSHIGFYR KKAKFKGIFG IRARLVLLAL ILVGPLMVER IRSLEDTRVK QVSMASSELS
ALAERTAASQ REIISSVEAV LKSSAYIHAS ASRIGRGCAT LRASLRVDLP SIRMLMVAGP
DGVVRCSTST MFVGLNISDR SYFKKAMESH DFVVSDFLVG RQTGKGTILA AYPVSAIDSG
EEAVLVAGLN LDWMSGVMGN LGGRPGVTAA LVDGDGIVLA TPPDQMSLVG QPFVGPAQPV
SPGLNDLGAE ERAFSGEAPG NNRAVYFAPI RGTTARLVVA VDEAKVSAGI NRDIRTAYLQ
LFLVCFIVLL GALIAAERLI VKPVNMMTEV AKKFGQGDWS ARVCRKRLPA EFVPLARAFN
AMAAHLVERE RGLVAINNRL TVMASIDVLS GLANRRGFQS RLDFEWMKAE QNGTDVGLLM
IDVDHFKPFN DTYGHPEGDA CISRIGETLA AIANDIGGFA ARYGGEEFCL LLAETDRASE
VGEMVRSAIA HLAIPHRTSV FQQVTVSVGV ACTVPHPANS PRDLIEAADA ALYAAKHRGR
NAVVEHGFIR GSDSGLSMAS
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