| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0196 |
|---|
| Symbol | |
|---|
| ID | 3971184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 214210 |
|---|
| End bp | 214746 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637923309 |
|---|
| Product | 2',5' RNA ligase |
|---|
| Protein accession | YP_530090 |
|---|
| Protein GI | 90421720 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1514] 2'-5' RNA ligase |
|---|
| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.905523 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGTT TATTCACTGG ACTGGAAATT CCGGCCGAGA TCGGCCAGAC GCTCTCCAAT
CTGCGCGGCG GGCTGCCCGG CGCACGCTGG ATCAACCCGG AAAATTACCA CGTCACCCTG
CGCTTCATCG GCGACATCGA CGGCGTCTCG GCCAACGAGA TCGCCTCGAT GCTGGTGCGG
ATCAACCGCA AGCCGTTCGA CGTCGCGGTT CAGGGGCTGC AAAGCTTCGG CGGCAAGAAG
CCGCGCGCGG TGGTGGCTTC GGTGGTGCCG TCGCGGCCGC TGATCGAGCT CCAGGCCGAA
TTGGAGCGGC TGATGCAGCG GCTCGGGCTC AACCCTGAGG GGCGCAAATT CACCCCGCAC
GTCACGCTGG CGCGGCTGCG CGACGCCTCC AACCAGGACG TCGCGGATTA TCTGTCGGTG
CGCGGCTATT TCCCGACCAG GGTGTTCACC GCCTCGCGCT TCGTGCTGTT CTCGTCGCGG
GCCTCCACCG GCGGCGGGCC TTACGTGGTG GAGGATTCTT ACGCGCTGAG CGCATAA
|
|---|
| Protein sequence | MPRLFTGLEI PAEIGQTLSN LRGGLPGARW INPENYHVTL RFIGDIDGVS ANEIASMLVR
INRKPFDVAV QGLQSFGGKK PRAVVASVVP SRPLIELQAE LERLMQRLGL NPEGRKFTPH
VTLARLRDAS NQDVADYLSV RGYFPTRVFT ASRFVLFSSR ASTGGGPYVV EDSYALSA
|
|---|
| |