Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_0070 |
Symbol | sdhA |
ID | 3971403 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 78963 |
End bp | 80786 |
Gene Length | 1824 bp |
Protein Length | 607 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637923186 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_529968 |
Protein GI | 90421598 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.563767 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGCGA ACGGCAACGG CGCGCCGGCC ATCAACGGCC ACGCCTATCC CATTGAAGAC CACAGCTACG ACGTCGTCGT GGTGGGCGCC GGCGGCGCCG GTCTGCGCGC CGTGGTCGGC TGCAGCGAGG CCGGCTTGCG CACCGCCTGC ATCACCAAGG TGTTTCCGAC CCGCTCCCAC ACCGTGGCGG CGCAGGGCGG CATCTCGGCC GCGCTCGGCA ATATGCACAA GGACGACTGG CGCTGGCACA TGTACGATAC CGTCAAGGGA TCGGACTGGC TCGGCGACCA GGATTCCATC GAATACATGG TGCGCAACGC GCCGCAGGCG GTCTACGAGC TGGAACATTG GGGCGTGCCG TTCTCGCGCA CCGACGACGG CAAGATCTAT CAGCGCCCGT TCGGCGGCAT GACGCTGGAC TACGGCAAGG GCCAGGCGCA GCGCACCTGC GCCGCCGCCG ATCGCACCGG CCACGCCATG CTGCACACCA TGTACGGCCA GGCGCTGCGG CATTCCGCCG AATTCTACAT CGAGTTCTTC GCCATCGATC TGATCATGGA CGATCAGGGC GTCTGCCGCG GCGTCATCGC GCTGAAGCTC GACGACGGCA CGCTGCATCG CTTCAAGGCG CAGACCACGA TTCTCGCCAC CGGCGGCTAC GGCCGCGCTT ACGCGTCCTG CACGTCGGCG CATACTTGCA CCGGCGACGG TGGCGCGATG GCGTTGCGCG CCGGGGTGCC GCTGCAGGAC ATGGAGTTCG TCCAGTTCCA CCCGACCGGG ATCTACGGCT CGGGCTGCCT GGTCACCGAA GGCGCCCGCG GTGAGGGCGG TTATCTGGTG AATTCCGAAG GCGAGCGCTT CATGGAACGC TACGCGCCCT CCGCCAAGGA TCTGGCGTCG CGCGACGTGG TGTCCCGCGC GATGACCATC GAGATCCGCG AAGGCCGCGG CGTCGGCAAG AAGAAAGACC ACATCTTCCT GCACCTCGAT CATCTCGATC CCAAGGTGCT GCACGAGCGG CTGCCGGGCA TTTCGGAATC GGCGCGGATC TTCGCCGGCG TCGACGTCAC CCGCGAGCCG ATCCCGATGA TTCCGACCGT GCACTACAAT ATGGGCGGCA TCCCGACCAA TTATCACGGC GAAGTGGTCA CCAAGAAGGA CGGCGACGAC AACGCCGTGG TGCATGGCCT GATGGCGCTC GGCGAGGCGG CTTGCGTCTC GGTGCACGGC GCCAACCGGC TCGGCTCCAA TTCGCTGATC GACCTCGTGG TGTTCGGCCG CGCCGCGGCG CTGCGCTGCG CCGAGAAGCT GACCCCGAAC GGCAAGCAGC CGGAACTGCC GGCGGACTCC GCCGAGCAGT CGCTGACCCG GCTCGACCGC TATCGCTACG CCTCGGGCGG CACGCCCACG GCACGCTTGC GCGAAAACAT GCAGCACGTG ATGCAGAACA ATTGCGCGGT GTTCCGCACC GGCGAAGTGC TGCAGGAAGG CAAGGGCCTG ATCCACAACG TGCACAGCGG CATCTCCGAC ATCCACGTCA CCGACCGCTC GCTGATCTGG AATTCCGATC TGATCGAGAC TTTGGAATTC GACAATCTGA TCGTGCAGGC GGTGGTGACG ATGGACTCCG CCGCCAACCG CACCGAGAGC CGCGGCGCCC ATGCCCGCGA GGATTTCTCG GCGCGCGACG ACAAGAACTG GATGAAGCAC ACGTTGGCGT GGATGGATCA CAGTGGCGAG ACCACGATCG ATTACCGCCC GGTGCACGAC TACACCATGA CCAACGACGT GCAGTACATC CCGCCGAAGG CGCGGGTGTA CTGA
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Protein sequence | MAANGNGAPA INGHAYPIED HSYDVVVVGA GGAGLRAVVG CSEAGLRTAC ITKVFPTRSH TVAAQGGISA ALGNMHKDDW RWHMYDTVKG SDWLGDQDSI EYMVRNAPQA VYELEHWGVP FSRTDDGKIY QRPFGGMTLD YGKGQAQRTC AAADRTGHAM LHTMYGQALR HSAEFYIEFF AIDLIMDDQG VCRGVIALKL DDGTLHRFKA QTTILATGGY GRAYASCTSA HTCTGDGGAM ALRAGVPLQD MEFVQFHPTG IYGSGCLVTE GARGEGGYLV NSEGERFMER YAPSAKDLAS RDVVSRAMTI EIREGRGVGK KKDHIFLHLD HLDPKVLHER LPGISESARI FAGVDVTREP IPMIPTVHYN MGGIPTNYHG EVVTKKDGDD NAVVHGLMAL GEAACVSVHG ANRLGSNSLI DLVVFGRAAA LRCAEKLTPN GKQPELPADS AEQSLTRLDR YRYASGGTPT ARLRENMQHV MQNNCAVFRT GEVLQEGKGL IHNVHSGISD IHVTDRSLIW NSDLIETLEF DNLIVQAVVT MDSAANRTES RGAHAREDFS ARDDKNWMKH TLAWMDHSGE TTIDYRPVHD YTMTNDVQYI PPKARVY
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