| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4460 |
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| Symbol | |
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| ID | 3912276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 5048763 |
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| End bp | 5050679 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637886363 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_488054 |
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| Protein GI | 86751558 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTAAAA CGCCGCTTCT CGACACCATC CGCACACCGG ACGATCTGCG CAAGCTCCGC
ATCGACCAGG TCCAGCAGGT TGCCGACGAA TTGCGGCAGG AAACCATCGA CGCGGTCTCG
GTCACGGGCG GCCATTTCGG CGCCGGCCTC GGCGTCGTCG AACTGACCAC GGCGATCCAC
TACGTCTTCG ATACGCCGCG CGACCGCCTG ATCTGGGACG TCGGCCATCA GGCCTATCCG
CACAAGATCC TGACCGGCCG CCGCGACCGC ATCCGCACGC TGCGCACCGC CGGCGGGCTG
TCCGGCTTCA CCAAGCGCAC CGAGAGCGAC TACGATCCGT TCGGCGCCGC GCATTCCTCG
ACCTCGATCT CCGCCGGCCT CGGCATGGCG GTGGCGCGCG ACCTCGCCGG CGGGACCAAC
AACGTCATCG CGGTGATCGG CGACGGTTCG ATCTCGGCCG GCATGGCCTA CGAGGCGATG
AACAACGCCG GCGCGATGAA CTCCCGTCTT ATCGTCATTC TCAATGACAA CAACATGTCG
ATCGCGCCCC CGGTCGGCGC CATGTCGGCC TATCTGTCGC GGCTGTATTC GGGCAAGACC
TACCGCTCGC TGCGCGAGGC CGGCAAGCAG ATCGGCAAGC ACCTGCCGAA GCTGATCGCC
GACCGTGCCG CCCGCGCCGA GGAATATTCC CGCGGCTTCA TGATGGGCGG CGGCACGCTG
TTCGAGGAAC TCGGCTTCTA TTACGTCGGC CCGATCGACG GCCACAATCT CGATCATCTG
CTGCCGATCC TGCAGAACGT CCGCGATGCC GAGACCGGCC CGTTCCTGAT CCATGTCGTC
ACGCAGAAGG GCAAGGGCTA CGCCCCGGCC GAAGCCGCGT CCGACAAGTA TCACGCGGTG
GTCAAGTTCG ACATCGCCAC CGGCACCCAG GCCAAGGCCA AGTCGAACGC GCCGTCCTAT
CAGAACGTGT TCGGCCAGAG CCTGGTCAAG GAAGCCGCCA AGGACGACAA GGTCGTCGGC
ATCACCGCGG CGATGCCGTC GGGCACCGGC ATCGACATCT TCGAGAAGGC CTTCCCGGAC
CGCACCTTCG ACGTCGGCAT CGCCGAGCAG CACGCGGTGA CTTTCGCGGC CGGCCTCGCC
ACCGAGGGCT TCAAGCCGTT CTGCGCGATC TACTCGACCT TCCTGCAGCG CGGTTACGAC
CAGATCGTCC ACGACGTCGC GATCCAGAGC CTGCCGGTTC GCTTCGCGAT CGACCGCGCC
GGCCTCGTCG GCGCCGACGG CGCGACCCAT GCGGGCTCGT TCGACAACGC TTATCTCGGC
TGCCTGCCGA ATTTCGTGAT CATGGCCGCC TCCGACGAGG CCGAGCTGGT GCACATGGTG
GCGACGCAAG TCGCGATCAA CGACCGGCCG AGCGCGGTGC GCTATCCGCG CGGCGAAGGC
CGCGGCGTCG AGATGCCGGA TGTCGGCGTC CCGCTCGAGA TCGGCAAGGG CCGCGTCATT
CGCCAGGGCA ACAAGGTCGC GCTGCTGTCG TTCGGCACGA GGCTCGCCGA GTGCGAAAAG
GCCGCCGAGG AACTGGCGAC GCTCGGTCTC TCCACCACCG TCGCCGATGC CCGCTTCATG
AAGCCGCTCG ACGTCGATCT GGTGATCAAG CTCGCCAACG AGCACGAGAT CCTGATCACC
ATCGAGGAAG GCTCGATCGG CGGCTTCGGC AGCCACGTGA TGCAGACGCT GTCCGACCAC
GGCAAGCTCG ACGGCGAGGT CAAGATGCGG GCGATGGTGC TGCCCGACGT GTTCCTCGAC
CACGACACGC CCGCGGCGAT GTACGCCGCC GCCGGCCTCG ACGCCAAGGC GATCGTCAAG
AAGGTGTTCG AAGCGCTCGG CAAGGAACAC GCCGCCGAGA CCGTCAAGCT GGCGTAA
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| Protein sequence | MSKTPLLDTI RTPDDLRKLR IDQVQQVADE LRQETIDAVS VTGGHFGAGL GVVELTTAIH
YVFDTPRDRL IWDVGHQAYP HKILTGRRDR IRTLRTAGGL SGFTKRTESD YDPFGAAHSS
TSISAGLGMA VARDLAGGTN NVIAVIGDGS ISAGMAYEAM NNAGAMNSRL IVILNDNNMS
IAPPVGAMSA YLSRLYSGKT YRSLREAGKQ IGKHLPKLIA DRAARAEEYS RGFMMGGGTL
FEELGFYYVG PIDGHNLDHL LPILQNVRDA ETGPFLIHVV TQKGKGYAPA EAASDKYHAV
VKFDIATGTQ AKAKSNAPSY QNVFGQSLVK EAAKDDKVVG ITAAMPSGTG IDIFEKAFPD
RTFDVGIAEQ HAVTFAAGLA TEGFKPFCAI YSTFLQRGYD QIVHDVAIQS LPVRFAIDRA
GLVGADGATH AGSFDNAYLG CLPNFVIMAA SDEAELVHMV ATQVAINDRP SAVRYPRGEG
RGVEMPDVGV PLEIGKGRVI RQGNKVALLS FGTRLAECEK AAEELATLGL STTVADARFM
KPLDVDLVIK LANEHEILIT IEEGSIGGFG SHVMQTLSDH GKLDGEVKMR AMVLPDVFLD
HDTPAAMYAA AGLDAKAIVK KVFEALGKEH AAETVKLA
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