Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_4330 |
Symbol | |
ID | 3912143 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 4912962 |
End bp | 4915082 |
Gene Length | 2121 bp |
Protein Length | 706 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637886234 |
Product | TRAP transporter, 4TM/12TM fusion protein |
Protein accession | YP_487928 |
Protein GI | 86751432 |
COG category | [R] General function prediction only |
COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.200779 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGCAGC CTGAGGCTAC GGTCGATCAC GCGCCCGCGC CGGTGAAAGT CGAGTTCGAC AATTTCGAGC ACGGCTTTCC AGCCGGGTTC GGGCCGCGCG GCTGGCGCCA TCTGGCCTAT GGGGTGGCGA TCGCCTTCGC GGTGTTTCAG CTCGTCATCG CGGCCTGGAA CGTGCTGCCG AGCCAGGTGG TGCGCGGCGT CCATGTCGGC TTCCTGGTGC TGCTGACCTT CGGGCTGATC GGCAATTTCA CCGCGCGCAG CGATTTCGGC CGCGCGGTGG CCTGGTCGAT CGGCGCGCTC GGCTTCCTGT GCGGGCTGTA TCAGTGGATC TTCTATGCCG ATCTGATCCT GCGTGACGGC GATCCGACCC ATCTCGACCT CGCGGTCGGC ACGCTGCTCG CGGTGCTGAT CTTCGAGGGC ACGCGGCGGC TGATGGGCCC GGCGCTGCCG ATCATGTGCG GCGTCTGCCT GCTGTACTGG TTTCTCGGCC AGTATCTGCC GGCGCCGTTC AATCATCGCG GCTATGATTT CGATCAGGTC GTCACCCATC TGTCGTTCGG CACCGAAGGT TTCTACGGCG TGCCGATCTA CGTGTCGGCG ACCTACATCT TCCTGTTCAT CCTGTTCGGC TCGTTCCTCG AGCGCGCCGG CATGATCCAG CTGTTCACCG ATGTCTCGCT CGGCCTGTTC GGCAGCACCC GCGGCGGCCC CGCCAAGGTC GCGGTGTTCG CCTCGGGGAT GATGGGCACG ATCTCCGGCT CCGGCGTCGC CAATGTCGTC ACCGTCGGCC AGTTCACCAT TCCGCTGATG ATCCGCTTCG GCTATCGCCG GGCCTTCGCC GCCGGCGTCG AGGCCACCGC CTCGATGGGC GGGCAGATCA TGCCGCCGGT GATGGGCGCG GTCGCCTTCA TCATGGCCGA GACGCTCGGC GTCGACTATT CGGTGGTGGT CAAGGCCGCG GTGATCCCGG CGTTCCTGTA CTTCGCCTCG GCGTTCTGGA TGGTGCATCT GGAGGCCGGC AAGCACGGCC TGGTCGGCAT GAAGAAATCC GAGATCCCGA GCGCGATGCG CGCGGTGATC GACCGCTGGT ACCTGATCCT GCCGCTGGCG GCGCTGGTCT ACATGCTGTT CGAGGGCTTC ACGCCGCTCT ACGCCGGCTC GATGGGGCTG GCGCTGACGG TGGCGCTGAT CCTCGGCGCC AGCATCGTGC ACGGCTTCTC CAACCAGGTG CTGCGCTACG TGTTCTGGAT CGGGCTGGCG CTGGTGGCCG GCGCGGTGCT GAACGACGGG CTCGACATCA TGAAGGTGAT CGTGGTGGTC GCGGTGCTGA TCGCGTTCAC CGCGATCACC CGCGGCGGCC GGGCCACGCT GGCGGCCTGC CGCGATTCGC TGGCCGACAG CGCCAAGTCG GCGCTCACCG TCGGCATGGC CTGCGCCATC GTCGGCACCA TCATCGGCAT GATGACACAA ACGGGGGTCG GCACCGTGTT CGGCGGCTGG GTGATCAGCT TCGGCGAGAA GAGCCTGTTC CTGGCTCTGG TGATGACCAT GCTGCTGTCG ATCCTGCTCG GCACCGGTAT CCCGACGATC CCGACCTACA TCATCACCGC CGCATTGGCC GCGCCGGCGC TGGCCCAGCT CGGCGTGCCG CTCTTGGTCA GCCACATGTT CGCGTTCTAC TACGGCATCA TGGCGGATCT GTCGCCGCCG GTGGCGCTGG CGGCGCTCGC CGCCGCGCCG ATCGCCAAGG AAAATCCTGA CAAGATCGGC TGGGAGGCGA TGCGGATCGC GCTCGCCGGC TACGTCATCC CGTTCATCGC GGTGTACTCA CCGGCGCTGA TGCTGCAGCC CGGCGACCCG ATGGCAGCGC AGCTCGGCTT CTACGGCGCG GTGCTCTACG CCACGTTGAA GGCGCTGATC GCGATCGGCC TGTTCGGCAT GGTGTCGATC GGTTTCCTGT ACACCCGCAT GAACGTGCTC GAGCGGCTCG TCGCCTTCGC CGCCAGCGTC TGCCTGCTCG GCGAATTTCC CTACAGCGAC TATGTCGGCT TCACCATCGC GGCGCTGGTG GTGGCGTGGC AATGGCGGCA GCGGTCGCGC AACGCGGTGG CGGCTGCGTG A
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Protein sequence | MLQPEATVDH APAPVKVEFD NFEHGFPAGF GPRGWRHLAY GVAIAFAVFQ LVIAAWNVLP SQVVRGVHVG FLVLLTFGLI GNFTARSDFG RAVAWSIGAL GFLCGLYQWI FYADLILRDG DPTHLDLAVG TLLAVLIFEG TRRLMGPALP IMCGVCLLYW FLGQYLPAPF NHRGYDFDQV VTHLSFGTEG FYGVPIYVSA TYIFLFILFG SFLERAGMIQ LFTDVSLGLF GSTRGGPAKV AVFASGMMGT ISGSGVANVV TVGQFTIPLM IRFGYRRAFA AGVEATASMG GQIMPPVMGA VAFIMAETLG VDYSVVVKAA VIPAFLYFAS AFWMVHLEAG KHGLVGMKKS EIPSAMRAVI DRWYLILPLA ALVYMLFEGF TPLYAGSMGL ALTVALILGA SIVHGFSNQV LRYVFWIGLA LVAGAVLNDG LDIMKVIVVV AVLIAFTAIT RGGRATLAAC RDSLADSAKS ALTVGMACAI VGTIIGMMTQ TGVGTVFGGW VISFGEKSLF LALVMTMLLS ILLGTGIPTI PTYIITAALA APALAQLGVP LLVSHMFAFY YGIMADLSPP VALAALAAAP IAKENPDKIG WEAMRIALAG YVIPFIAVYS PALMLQPGDP MAAQLGFYGA VLYATLKALI AIGLFGMVSI GFLYTRMNVL ERLVAFAASV CLLGEFPYSD YVGFTIAALV VAWQWRQRSR NAVAAA
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