| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4001 |
|---|
| Symbol | |
|---|
| ID | 3911808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4567690 |
|---|
| End bp | 4568688 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637885905 |
|---|
| Product | chlorophyllide reductase iron protein subunit X |
|---|
| Protein accession | YP_487605 |
|---|
| Protein GI | 86751109 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1348] Nitrogenase subunit NifH (ATPase) |
|---|
| TIGRFAM ID | [TIGR02016] chlorophyllide reductase iron protein subunit X |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.18225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00239808 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTCG TTCCGCAGAT CAACCTGCAA GACGCGCAAC TCCGGGCCGA GGCGGCAATC
GAGCCCGACG CGCCGCTGAC GACTCCCGTG ACCAAGGAAA CCCAGATCAT CGCGATCTAC
GGCAAGGGCG GTATCGGCAA GAGCTTCACG CTCTCCAACC TGTCCTACAT GATGGCGCAG
CAGGGCAAGA AAGTGCTGCT GATCGGCTGC GATCCGAAGA GCGATACGAC ATCGCTGCTG
TTCGGCGGCA AGGCCTGTCC GACCATCATC GAGACGTCTT CGAAGAAGAA GCTTGCCGGC
GAGGAAGTGC AGATCGGCGA CGTCTGCTTC AAGCGCGACG GCGTGTTCGC GATGGAGCTC
GGCGGCCCGG AAGTCGGCCG CGGTTGTGGC GGCCGTGGCA TCATTCACGG CTTCGAGACG
CTCGAAAAGC TCGGCTTCCA CGAATGGGGC TTCGACTACG TGCTGCTCGA TTTCCTCGGC
GACGTGGTGT GCGGCGGCTT CGGCCTGCCG ATCGCCCGCG ACATGTGCCA GAAGGTGATC
ATCGTCGGCT CCAACGATCT GCAGTCGCTG TACGTCGCCA ACAACGTCTG CTCCGCGGTT
GAATATTTCC GCAAGCTCGG CGGCAATGTC GGCGTCGCCG GTCTGGTGAT CAACAAAGAT
GACGGCACCG GCGAGGCGCA GGCCTTCGCC GAAGCGGCCG GCATTCCGGT GCTGGCGGCG
ATTCCCGCCG ATGACGACAT CCGCAGGAAG AGCGCCAATT ACGAAATCAT CGGCCTGCCG
GACGGGGAGT GGGGTCCGCT GTTCGCGGAG CTGGCCGCCA ACGTCGCCAC CGCGCCGCCG
GTACGTCCGA AGCCGCTCAC CCAGGACGGG CTGCTCGGCC TGTTCTCCAG TGACGTGACC
GGCCGCGATG TCGTGCTGCT GCCCGCCACC ATGGAAGACA TGTGCGGCGC CGCGGTGCTG
AACAAGCCGT CGCTCGAAGT GATCTACGAC GCGGTTTGA
|
|---|
| Protein sequence | MNVVPQINLQ DAQLRAEAAI EPDAPLTTPV TKETQIIAIY GKGGIGKSFT LSNLSYMMAQ
QGKKVLLIGC DPKSDTTSLL FGGKACPTII ETSSKKKLAG EEVQIGDVCF KRDGVFAMEL
GGPEVGRGCG GRGIIHGFET LEKLGFHEWG FDYVLLDFLG DVVCGGFGLP IARDMCQKVI
IVGSNDLQSL YVANNVCSAV EYFRKLGGNV GVAGLVINKD DGTGEAQAFA EAAGIPVLAA
IPADDDIRRK SANYEIIGLP DGEWGPLFAE LAANVATAPP VRPKPLTQDG LLGLFSSDVT
GRDVVLLPAT MEDMCGAAVL NKPSLEVIYD AV
|
|---|
| |