| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3975 |
|---|
| Symbol | |
|---|
| ID | 3911782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4538390 |
|---|
| End bp | 4539154 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637885879 |
|---|
| Product | photosynthetic reaction centre, H-chain |
|---|
| Protein accession | YP_487579 |
|---|
| Protein GI | 86751083 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01150] photosynthetic reaction center, subunit H, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0176232 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.276586 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCCG GAGCGTATTT GGACTTAGCA CAGGTTACCC TGTACGTATT TTGGATCTTC
TTCGCAGGCT TGCTCTTCTA TCTTCGCCGT GAAGACAAGC GCGAAGGATA TCCGCTGATC
CCCGACACCG GCACGGGCCG GCTGCGGAAG ACCGGCATTC CGGCTTCGCC GGATCCGAAG
ACCTATCTGC TGCGCGGTGG TGCGACCCGG ACCGTGCCGA GCGTCAGCAA CGATCGTCCC
AACGTCGCGC TGGCTCCGGT CGCTCCGTGG CCGGGTGCAG CGTTCGCGCC GACCGGCGAC
CCGTTCGCCG ACGGCGTCGG CCCCGGCTCC TACGCCCAGC GTCAGGACGT TCCGGAGGCC
GGACTCGACA ACCTGCCGAT CATCGCGCCG CTGCGTGCGG CGAAGGGCAT GTTCCTCGAT
CCGCGTGACC CCAATCCGGT CGGCATGCCG GTGATCGGCT GTGACGGCCA GGTCGGCGGC
ACGGTGACCG AGGTCTGGGT CGACCGGGCC GAAGTCATTG CCCGCTATCT CGAAGTCGAG
GTCGCAAAGA GCAAGAAGCG CGTGCTTCTG CCGGTTCCGT TCGCGCTGAT CAACAGCCCG
AGCGGCCGTG TGTCCGTCGA TGCCATTCGT GGCGACCAGT TCGCTGGCGT CCCGACCATC
GCCAAGGCGG ATCAGGTCAC CAAGCTCGAA GAAGACAAGA TCTGTGCCTA CTACGGCGCC
GGCACGCTCT ACGCCACGCC GATGCGTCAG GAGCCGATCG TATGA
|
|---|
| Protein sequence | MQPGAYLDLA QVTLYVFWIF FAGLLFYLRR EDKREGYPLI PDTGTGRLRK TGIPASPDPK
TYLLRGGATR TVPSVSNDRP NVALAPVAPW PGAAFAPTGD PFADGVGPGS YAQRQDVPEA
GLDNLPIIAP LRAAKGMFLD PRDPNPVGMP VIGCDGQVGG TVTEVWVDRA EVIARYLEVE
VAKSKKRVLL PVPFALINSP SGRVSVDAIR GDQFAGVPTI AKADQVTKLE EDKICAYYGA
GTLYATPMRQ EPIV
|
|---|
| |