Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3881 |
Symbol | |
ID | 3911685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 4435730 |
End bp | 4436419 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637885782 |
Product | ABC transporter related |
Protein accession | YP_487485 |
Protein GI | 86750989 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.770849 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCTGAAG TCCTGCGCCT CGACGGCATC CGCAAATCCT ACAATGTCGG CACCCCGGTC GAGACCGAGG TGCTGCACGG CATCGACCTG ACCTTGCAGG CGCGCGACTT TCTGGCGCTG ATGGGGCCGT CCGGCTCGGG TAAATCGACG CTGCTCAACA TCATCGGCCT GCTCGACCGG CCGACCGCCG GCCGGCTCGC GATCAACGGC GAGGACACCG GCGAGCTCGG CGATGCCGCG CTGACGCAGC TTCGCGGCCG CGCCATCGGC TTCGTGTTCC AGTATCACTA TCTGATCTCG GCCTTCACCG CGCGCGAGAA CGTGATGATG CCGATGCTGG TCGATCGCGG CCGTCCGGAC AGCGCGATGG AGCGCCGCGC CGACGAACTG CTCGACCGCG TCGGCTTGAG CCGCTGGCGC AACAACAGCG CCAACAACAT GTCGGGCGGC CAGCAGCAGC GTGTCGCCAT CGCGCGCGCG CTGGCGATGG ACCCCGACCT CGTGCTCGCC GACGAGCCGA CCGGCAATCT CGACACCAAA TCCGCCGACG ACGTGTTCGC GCTGATGCGC GAGATCAACC GCGAACGCGG CACCACGTTT CTGCTGGTGA CCCACAATGA CGACCTCGCC GCAAGATGCG ACCGCATCGT GCGCGTCGTG GATGGGGTGA TCGCAGGCGA GGGTAATTAG
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Protein sequence | MAEVLRLDGI RKSYNVGTPV ETEVLHGIDL TLQARDFLAL MGPSGSGKST LLNIIGLLDR PTAGRLAING EDTGELGDAA LTQLRGRAIG FVFQYHYLIS AFTARENVMM PMLVDRGRPD SAMERRADEL LDRVGLSRWR NNSANNMSGG QQQRVAIARA LAMDPDLVLA DEPTGNLDTK SADDVFALMR EINRERGTTF LLVTHNDDLA ARCDRIVRVV DGVIAGEGN
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