| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3868 |
|---|
| Symbol | |
|---|
| ID | 3911672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 4422829 |
|---|
| End bp | 4423680 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637885769 |
|---|
| Product | 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD_Fe |
|---|
| Protein accession | YP_487472 |
|---|
| Protein GI | 86750976 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3384] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02298] 3,4-dihydroxyphenylacetate 2,3-dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.90869 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAAC TGGTGCTCGC CGCGAAGGTG ACCCACGTTC CCTCGTTGAT GTTGTCGGAG
GCCGGCGACA GTCCACTGAA GCAGGCGCGC GCCGGCGCGG TGGAGTCGCT GCGCGAACTC
GGCCGACGCG CCAGGACCCG CGACGTCTCC ACCTTCGTGG TGTTCGACAC CCATTGGCTG
TCGAATTTCG GCTACCACGT CAACGCCAAT GCCCGGCATC GCGGCTCCTT CACCAGCCAC
GAAGCGCCGC ACATGATCCA GGATCTGCGC TACGATCTGC CGGGCGACAC CGCGCTCGCC
GAAGCGATCG CCAGCGAGGC GGAGAGCGCC GGTCTCAAGG TGCTCGCGCA TCAAGTTCCG
ACGCTGGGGC TGGAGTACGG CACCATCGTG CCGATGCACT ATCTGAATCC CGACGGCTGG
GCCAAGGTGG TGTCGATCGC CTCGCCGTTG TTCACCTCGA TCGAGGAAAG CCGCGCGCTC
GGCGAGGCGA CGCGGCGCGC GATCGATCAG TCCGGCGAGC GAGTGGCTCT TCTCGCCAGC
GGATCGCTGT CGCATCGGCT GTGGCCGAAC AAAAACCTCG GCCCGGAGGC CTGGACCTCG
ATCGCCAGTG AGTTCAATCG CCAGGTCGAC CTGCGCGTGC TGCAACTCTG GCAGGAGCGG
CGCTACCGCG AATTCACCGC GATGCTCCCG GACTATGCGG TGAAGTGCAA CGGCGAGGGC
GGCATGGGCG ACACCGTGAT GCTGTTCGCC GCGCTCGGCT GGGACAAGTA CGACGGCGAG
GCGGAGCCGC TTTGCGACTA CTTTCCGTCG AGCGGCAGCG GGCAGATCAA CGTCGAATTC
CATGTCGCGT GA
|
|---|
| Protein sequence | MGKLVLAAKV THVPSLMLSE AGDSPLKQAR AGAVESLREL GRRARTRDVS TFVVFDTHWL
SNFGYHVNAN ARHRGSFTSH EAPHMIQDLR YDLPGDTALA EAIASEAESA GLKVLAHQVP
TLGLEYGTIV PMHYLNPDGW AKVVSIASPL FTSIEESRAL GEATRRAIDQ SGERVALLAS
GSLSHRLWPN KNLGPEAWTS IASEFNRQVD LRVLQLWQER RYREFTAMLP DYAVKCNGEG
GMGDTVMLFA ALGWDKYDGE AEPLCDYFPS SGSGQINVEF HVA
|
|---|
| |