| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3620 |
|---|
| Symbol | |
|---|
| ID | 3911422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4155106 |
|---|
| End bp | 4156356 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637885522 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_487226 |
|---|
| Protein GI | 86750730 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.963637 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.598514 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA ATCGCCGTCA TCTCGTGATC GGAGGCGCCG CCAGCGCCGC CGTCCTGCCG
TTCGGAACTG CCGCGCGCGC GCAGGCCAAG GAAGTCGTGA TCGGCGTGAT CTATCCGCTG
TCCGGCGCCA GCGCCCAGAT CGGCGTCGAC GCCCAGAAGG CGTTTCAGAC CGCGGCCGAA
CTGATCAACA ACAAATACGA TTTCGACCTG CCGCTGGCCC GTGACGAGGG CCTTCCCGGT
CTCGGCGGCG CCAAGGTGCG GCTGGTGTTC GCCGATCACC AAGCCGACCC GCAGAAGGGC
CGCGCCGAAG CCGAGCGCCT GATCACGCAG GAAAAGGTCA GCGCCATCGT CGGCACCTAT
CAGAGCGCGG TCGCCGTCAC CGTCAGCCAG ATCTGCGAGC GCTACCAGGT TCCCTTCCTG
TCGGCCGACA ATTCGTCGCC GAGCCTGCAT CGTCGCGGCC TCAAATACTA TTTCCGCGCC
GCGCCGCACG ACGAGATGTT CTCGCAGGCG ATGTTCGACT TCTTCGATGC GCTGAAGAAG
AAGGGCAAGA AGATCGAGAC GCTGGCGCTG TTCCACGAGG ACACCATTTT CGGCACCGAC
TCGTCGAACG CCCAGCTCAA GCTCGCCAAG GACCGTGGCT ACAAGATCGT CGCCGATATC
AAGTATCGCG CCAACTCGCC GTCGCTGACC GCCGAGGTGC AGCAACTCAA GGCGGCCGAC
GCCGACGTGC TGATGCCGTC GAGCTACACC ACCGACGGCA TTCTGCTGAT CCGCACCATG
GGCGAACTCG GCTACAAGGC CAAGAACATC GTCGCGCAGG ACGCGGGCTT CTCGGAGAAG
GCGCTGTACG ACGCGGTCGG CGACAAGATC CCGGGCGTGA TCTCGCGCGG CTCGTTCTCG
CTCGACCTCG CCGCCAAGCG GCCGATGGTC GGCAAGATCA ACGACATGTA CAAGGAGCGC
TCCGGCAAGG ACTTCAACGA CTACTCGTCG CGGCAGTTCA TGGGCCTGAT CGTGATGGCC
GACGCCATCA ACCGCGCCAA ATCGACCGAC GGCGAGAAGA TCCGCGAGGC GCTGGTCGCC
ACCGACATGC CGGGCGAAAA GACCATCATG CCGTGGAAGC AGGTGAAGTT CGACGCCGAA
GGCCAGAACA CCTTCGCCGA CCCGGTGTTG CTGCAATATG TCGGCGGCAA GTTCGTGACG
ATCTTCCCGG AACAGGCCGC AGTCGCCGAG GCGATCTGGC CGATGCCGTA A
|
|---|
| Protein sequence | MKINRRHLVI GGAASAAVLP FGTAARAQAK EVVIGVIYPL SGASAQIGVD AQKAFQTAAE
LINNKYDFDL PLARDEGLPG LGGAKVRLVF ADHQADPQKG RAEAERLITQ EKVSAIVGTY
QSAVAVTVSQ ICERYQVPFL SADNSSPSLH RRGLKYYFRA APHDEMFSQA MFDFFDALKK
KGKKIETLAL FHEDTIFGTD SSNAQLKLAK DRGYKIVADI KYRANSPSLT AEVQQLKAAD
ADVLMPSSYT TDGILLIRTM GELGYKAKNI VAQDAGFSEK ALYDAVGDKI PGVISRGSFS
LDLAAKRPMV GKINDMYKER SGKDFNDYSS RQFMGLIVMA DAINRAKSTD GEKIREALVA
TDMPGEKTIM PWKQVKFDAE GQNTFADPVL LQYVGGKFVT IFPEQAAVAE AIWPMP
|
|---|
| |