| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3561 |
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| Symbol | |
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| ID | 3911363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4076950 |
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| End bp | 4078191 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637885463 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_487167 |
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| Protein GI | 86750671 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.398677 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGAAAC ACGTTACGCG AAGGCTGCGA CGTGTGACGC GGAAGCGGCT GGTGCTGACC
GGCTGCCTGG TCGTCGGCGT CGCCGTGGCC GGCTCCATCG TCGCGGACCG CTACGCAGCC
ACCGAGGTCC ATTCGGAGAT CTCCAGCCAG TCGCGTCGCA GCGCCGATCG CTACACCCCG
AGCGCGGCGG AATGGGCGAG CCTGACCATC GAGAAGGTGA GCGATTTCAG CTTCCGCGCC
GAGCACGTCA CCGAAGGCAA GATCGCCATC GACGAGGATC GCTCGACGCC TGTGTTCTCG
CCTTATGCGG GTCGGGTGAC GAAACTGCTG GCGCGCCCCG GCGATCATGT CGTGCAGGGT
CAGCCGCTGT TCACGATCGA GGCGCCGGAC ACGGTGCAGG CGCAGAACGA TTTCATCGTC
GCCTCCACCG CGCTGAACAA GGCGAAGTCG CAGCTCGAAC TGGCGCAGTT TCAGGACAAG
CGTGCGCGCG ATCTGTTCGA CGGCAAGGCG GTGCCGCTGA AGGACTATCA GCAGGCCCAG
GCGACGCTGA CGAGCGCGCA GAACGACATG CAGTCGGCGA CCACGGCGCT CGAAGCCGCG
CGCAACCGTT TGCGGATCCT CGGATTGACC GAGAGCGCGA TCACGGCGTT TCAGGACAAG
GGCAGGATCA ATCCGGAGAC GACGATCTAC GCGCCGATCG CCGGCACGGT GGTGCAGCGC
AAGATCGGCC CCGGGCAATA CGTCAATGCC GGCGCCAGCG ATCCGGTGTT CGTGATCGGT
GACCTGTCGA CGGTGTGGCT CACCGCCTTC GTCCGCGAGT CCGAGGCTGC CGACGTCGAG
GTCGGCCAGG ACATCAGCTT CCAGGTGCTG GCACTGCCCG GCCGCACGCT GACCGGCCGC
ATCAACTACG TCGCCGCCGC GATCGACCCC GCCACGCGCC GGCTGATGGT TCGCGCCACC
ATGGACAATC CCGACGGCGC GCTGAAGCCG GAAATGTTCG CCAATGTCAC GATCTACTCG
GCGTCCGACC ACCCCGCAGT CGGCGTGCCG CGCACGGCGC TGATCTACGA GGGCGACCAG
GTCCGGGTCT GGGTCGCGCG CGACGACCGC TCGATCGAGC TGCGCACCAT CAAGCCGGGG
CTCACCGCGG GCAATCTGGT CGAAGTGATC GGCAATCTGC AGCCGGGCGA AAAGATCGTC
ACCAAGGGCG CCCTGTTCAT CGATCGCGCG GCGACCGGTT GA
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| Protein sequence | MWKHVTRRLR RVTRKRLVLT GCLVVGVAVA GSIVADRYAA TEVHSEISSQ SRRSADRYTP
SAAEWASLTI EKVSDFSFRA EHVTEGKIAI DEDRSTPVFS PYAGRVTKLL ARPGDHVVQG
QPLFTIEAPD TVQAQNDFIV ASTALNKAKS QLELAQFQDK RARDLFDGKA VPLKDYQQAQ
ATLTSAQNDM QSATTALEAA RNRLRILGLT ESAITAFQDK GRINPETTIY APIAGTVVQR
KIGPGQYVNA GASDPVFVIG DLSTVWLTAF VRESEAADVE VGQDISFQVL ALPGRTLTGR
INYVAAAIDP ATRRLMVRAT MDNPDGALKP EMFANVTIYS ASDHPAVGVP RTALIYEGDQ
VRVWVARDDR SIELRTIKPG LTAGNLVEVI GNLQPGEKIV TKGALFIDRA ATG
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