| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3504 |
|---|
| Symbol | |
|---|
| ID | 3911306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 4010789 |
|---|
| End bp | 4012585 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637885406 |
|---|
| Product | chloride peroxidase |
|---|
| Protein accession | YP_487110 |
|---|
| Protein GI | 86750614 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCA GGCGAGTTTT CGTCGCGACG TTCATACTGT CGCTCACTCC CGTGGTTTCC
ACGGCCCAGC CGGTGCTTCA GACACAATCG CTCGACGACT TCCGGCGAAT CCTCAGTCCC
GGCCTGATTT CGCGCGAGGT GACCAGCGAA AAGGTGAGTC AACTCAACGC GGAGGCTGCG
AAGAGCTGCT TCGCCCCCGA CGCGTTTCAG CGCGCGATCC CGGCACTGCC GATCAGATAT
AAGCGGCCAC TTCCTTGCGC CCCGCAGAAT GCGTTCGACC GGTTCGTGAT GTGGAATCAG
ATCGCACTCG ACACCACATC GATGGATCAT GCTCCGCCGC CATTGGGCAC GCCGGACAAT
CCCGCCCTGC ACAATTACGG CCCGCACCGC TCGAGCCGGG TGATGGCGAT CGTTCACATC
GCGATGTTCG ACGCGATCAA TCTGGCGATG CGGTTCGACT CGAAATCACC CGACAAGCCG
AGATACGTGT TCGCGACCTA TCTGCAGGGC ATTCCCAATC CGAAAGAAGA CGCCTCGGTC
GACATGGCGA TCACGTATTC GGCGGGTGAG ACCCTGAAGG CGCTTTATCC TCAACAGGTG
GATGTGATCG AGAATCTCAT CGCCATCGAC GAGGGCGCCG TCCTGAGCGG CAAGGATCGC
AACGCGCCGA TGTATCGGGC CGGCCGCGAA CTCGGAATCA CCGTCGCGAA GGCGATTCTC
CGGGCACGCC GGAACGACGG CTCGGCGCAC GAAGAGCCGC AGGTCGGCGA TCCTGGCTTT
CCGCTCGCGG AAAAATCAGG TCAGTGGCGA CCCGACCCCG TCAGCAACAT CGCCGCGGCG
CTCGGCGGCA AGTGGAAGGA CGTTCAGCCG TTCGTCATCA AGAACGTGCC GACCTTCCGG
CCGCCCCCGC CGCCGTCGAC CGACAGCGCC GAATACGCCC GGGACTTCGA AGAGGTCAGG
AAGCTCGGCG GCGAGAACAC CGAGCGCTCG AGGTCTGAAC GCAGTGCGGA CCAGACACTG
ATCGGAACGT TCTGGGCTTA TGACGGCACC GCTTTCCTGT GCGCTCCGCC GCGGCTCTAC
AATCAGGTGA TCCGGCAGAT CGTGCAGCAG CAGATCAAGG ACGGCGATAC CAAGGACGAG
GATCCGAAGC TGCTCAACTA CGCCCGATTG TTCGCGCTCG CCAACATCGC AATGGCGGAC
GCGGCGATCG CCGCATGGGA CGCAAAGTAT CACTATCGCT ACTGGCGCCC GGTCGTCGGC
ATTCGGGCGG CCGCGACCGA CGGCAACGAT GCCACCCATG CCGACGTCTA CTGGAAGGCG
CTGGGGGCCC CGGCCAGCAA CTCCGTTCGC GGTCCCAACT TCACGCCTCC TTTCCCGGCC
TATCCTTCCG GACACGCCAC GTTCGGCGGC GCTCTGTTCG AAGTGCTGCG CGCGTTCTAC
CCGGACGACA CGTCCTTCAG CTTCATCTCC GACGAGTACA ACGGGCAAAA CAAGCCGGCC
GGCTCGGACG TGCCGCGACC GGAAGTGACC CGACGCTTCG TCAACTTCCG CGCGGCGGAG
GACGAAAATG CGCGCAGCCG GGTCTATCTC GGTGTGCACT GGCAGTTCGA TGCCGATGCC
GGGATCGCGC AGGGCAACCA GGTCGGCAGC TTCGTGGTCG GCAGCACGCT GCGCTGTCTC
GACGATGACG GCAGAGCGCT GGATTGCAAA CCGGGCAGCG GATTCGACGT CAAGCGCAAG
TTCCTGATCT CGACGGAGAA GCGGGTGCTG AGCACTCCGT TCACTCCGTC CCAGTAA
|
|---|
| Protein sequence | MTIRRVFVAT FILSLTPVVS TAQPVLQTQS LDDFRRILSP GLISREVTSE KVSQLNAEAA
KSCFAPDAFQ RAIPALPIRY KRPLPCAPQN AFDRFVMWNQ IALDTTSMDH APPPLGTPDN
PALHNYGPHR SSRVMAIVHI AMFDAINLAM RFDSKSPDKP RYVFATYLQG IPNPKEDASV
DMAITYSAGE TLKALYPQQV DVIENLIAID EGAVLSGKDR NAPMYRAGRE LGITVAKAIL
RARRNDGSAH EEPQVGDPGF PLAEKSGQWR PDPVSNIAAA LGGKWKDVQP FVIKNVPTFR
PPPPPSTDSA EYARDFEEVR KLGGENTERS RSERSADQTL IGTFWAYDGT AFLCAPPRLY
NQVIRQIVQQ QIKDGDTKDE DPKLLNYARL FALANIAMAD AAIAAWDAKY HYRYWRPVVG
IRAAATDGND ATHADVYWKA LGAPASNSVR GPNFTPPFPA YPSGHATFGG ALFEVLRAFY
PDDTSFSFIS DEYNGQNKPA GSDVPRPEVT RRFVNFRAAE DENARSRVYL GVHWQFDADA
GIAQGNQVGS FVVGSTLRCL DDDGRALDCK PGSGFDVKRK FLISTEKRVL STPFTPSQ
|
|---|
| |