| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3448 |
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| Symbol | |
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| ID | 3911250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3953431 |
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| End bp | 3955413 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637885351 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_487055 |
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| Protein GI | 86750559 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.186269 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0456114 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCCG AGGCCGGCCA CTACGCGCTG GTGCTGGCGC TGGCGCTGGC GCTGATCCAG
TCGACGGTGC CGATCCTCGG CGCGCGGCTG GGCGACGGCG GGCTGATGAA CGTCGCGCGC
TCGGCGGCGC TGGCGCAATT CGTCTTCGTC GCCGTCTCGT TCGGCGCGCT GGTCTGGCTC
AACGTCACCT CCGACTTCTC GGTCGTCAAC GTCTACGAGA ATTCGCATTC GGCCAAGCCG
CTGCTCTACA AGATCACCGG CGTGTGGGGG AACCACGAAG GTTCGATGCT GCTGTGGGTG
GCGATCCTGG CGCTGTTCGG CGGCATGGTC GCAGCGTTCG GCAACAACCT GCCGCTGTCG
CTGCGCGCCC ACGTGCTAGC GGTGCAGGCC TGGGTGGCGA GCGCGTTCTA TCTGTTCATC
CTGATCACCT CGAACCCGTT CCTGCGGATT CCCAATCCGC CGCTCGAGGG TCGCGACCTC
AATCCGGTAC TGCAGGACAT CGGCCTCGCG GTGCATCCGC CGCTGCTGTA TCTCGGCTAT
GTCGGCTTCT CGATCTCGTT CTCCTTCGCC GCCGCGGCGC TGATCGAGGG GCGGCTCGAC
GCGGCCTGGG CGCGCTGGGT GCGGCCGTGG ACGCTGATGG CGTGGATCTT CCTGACGCTG
GGCATCGCGA TGGGCTCGTA CTGGGCCTAT TACGAACTCG GCTGGGGCGG CTGGTGGTTC
TGGGACCCGG TCGAGAACGC CTCGCTGATG CCGTGGCTCG CCGGCACCGC GCTGCTGCAT
TCGGCGCTGG TGATGGAGAA GCGCAACGCG CTGAAGGTCT GGACCATCCT GCTGTCGATC
CTGACCTTCT CGCTGTCGCT GCTCGGCACC TTCCTGGTGC GCTCAGGCGT CTTGACCTCG
GTGCACACCT TCGCCACCGA TCCGTCGCGC GGCGTGTTCA TCCTGATGAT CCTGTGCATC
TTCATCGGCG GCAGCCTGGC GCTGTTTGCC TGGCGCGCCT CGGCGCTGAA GCAGGGCGGG
CTGTTCGCGC CGATCTCGCG CGAGGGCGCG CTGGTGCTGA ACAATCTGTT TCTCACCACC
GCCTGCGCCA CGGTGTTCGT CGGCACGCTG TATCCGCTGG CGCTGGAAGT TCTCACCGGC
GACAAGATCT CGGTCGGCGC GCCGTTCTTC AATCTCACCT TCGGTCCGCT GATGGTGCCG
CTGATGCTGG CGATGCCGTT CGGCCCGCTG CTGGCGTGGA AGCGCGGCGA TCTGCTCGGT
GCCGCCCAGC GGCTGATCGC CGCCGGCGTC GTCGCGCTGC TCGCGGTCGC CCTGGTCTGG
GCCTGGACGT TCGGCGGCCC GGTGCTGGCG CCGCTGGCGA TCGGGCTCGC GGTGTTCGTG
ATTGCCGGCG CGCTCGCCGA CATCGTCGAG CGCATCGGCC TGCTGCGCAA TCCGTTGTCG
ATTGCGGCGC GCCGCGCCCG AGGGCTGCCG CGCTCGGCGT GGGGCACGCT GTTCGCTCAT
GCCGGCATCG GCGTGGCGCT GATCGGCATC GTCTGCGAGA CCACCTGGAA CAGCGAGCAC
ATCGCCGCGA TGAAGGAGGG CGAGTCCGCC AAGCTCGCCG GCTACGAACT CAAATTCGAC
GGCGCGATTC AGCGCCAGGG CCCGAACTAT CGCGAGTTGC AGACGCATTT CTCGGTCAGC
GAGAACGGCC GGCCGATCGG CGCGATGACG CCGTCGAAGC GCAGCTTCAC CACCCGCAAC
ACGTCGACCA CCGAGGCTGC GCTGCTGACC CGCGGCGTCA GCCAGCTCTA CATCTCGCTC
GGCGACATCG ACGCCGCCGG CGCGGTGACG GTGCGGATCT ATCACAAGCC CTTGGTGCTG
CTGATCTGGA TCGGTCCGCT GCTGATGGCG TTCGGCGGCC TGTTGTCACT GTCGGATCGG
CGGCTGCGCG TCGGCGCGCC GAAGCCGGCC AAGCCGCAGC GCTTGCTGCA GCCGGCGGAG
TAA
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| Protein sequence | MIAEAGHYAL VLALALALIQ STVPILGARL GDGGLMNVAR SAALAQFVFV AVSFGALVWL
NVTSDFSVVN VYENSHSAKP LLYKITGVWG NHEGSMLLWV AILALFGGMV AAFGNNLPLS
LRAHVLAVQA WVASAFYLFI LITSNPFLRI PNPPLEGRDL NPVLQDIGLA VHPPLLYLGY
VGFSISFSFA AAALIEGRLD AAWARWVRPW TLMAWIFLTL GIAMGSYWAY YELGWGGWWF
WDPVENASLM PWLAGTALLH SALVMEKRNA LKVWTILLSI LTFSLSLLGT FLVRSGVLTS
VHTFATDPSR GVFILMILCI FIGGSLALFA WRASALKQGG LFAPISREGA LVLNNLFLTT
ACATVFVGTL YPLALEVLTG DKISVGAPFF NLTFGPLMVP LMLAMPFGPL LAWKRGDLLG
AAQRLIAAGV VALLAVALVW AWTFGGPVLA PLAIGLAVFV IAGALADIVE RIGLLRNPLS
IAARRARGLP RSAWGTLFAH AGIGVALIGI VCETTWNSEH IAAMKEGESA KLAGYELKFD
GAIQRQGPNY RELQTHFSVS ENGRPIGAMT PSKRSFTTRN TSTTEAALLT RGVSQLYISL
GDIDAAGAVT VRIYHKPLVL LIWIGPLLMA FGGLLSLSDR RLRVGAPKPA KPQRLLQPAE
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