Gene RPB_3000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3000 
Symbol 
ID3910799 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp3415222 
End bp3415788 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content67% 
IMG OID637884906 
Productcytochrome B561 
Protein accessionYP_486613 
Protein GI86750117 
COG category[C] Energy production and conversion 
COG ID[COG3038] Cytochrome B561 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.426718 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0305282 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACGA CCACCTTTGA ATCCACGGGG AAGAGCCCGA GCACGTATGG CGGCTTCGCC 
GTCGCCCTTC ATTGGCTGAT CTTCTTCGCC GTGATCGCGC TGTTCGCCTC CATGAATTAT
GCCCAGGGCC TGGAGAAAGC CGACCCGCTG CGCGGCACGC TGTACAATTG GCACAAGGCG
ATCGGCACGG TGGTGCTGGG CCTCGCGGTG CTGCGCGTTC TGTGGATCAG GATCCACGGT
GCGCCGGACC TGGTGCCGTC GCCGCGGATC ACCGAGGTGA TCGCCCGGAT CAGCCACGGC
CTGCTGTATC TGCTGCTGAT CGCCCTGCCC GCCACCGGCG TCGGCATGAC GCTGTTCTCC
GGCCGCGGCA TCGATCTGCT CGGCATCCCG CCGCTGCTCG AAGCCAACAA GGCGGTGGCC
GGCGCACTGC ACGCGGCCCA CGGACCGCTG TTCCTGGCGA CGGTCATCGT GGTGTTCATC
CACGTCATCG GCGCGCTGTG GCATCAATAC GGCCGCCACG ACGCCACGCT CGGCCGCATG
GTGCCCTGGC TGCGCGTCAA GGAGTGA
 
Protein sequence
MTTTTFESTG KSPSTYGGFA VALHWLIFFA VIALFASMNY AQGLEKADPL RGTLYNWHKA 
IGTVVLGLAV LRVLWIRIHG APDLVPSPRI TEVIARISHG LLYLLLIALP ATGVGMTLFS
GRGIDLLGIP PLLEANKAVA GALHAAHGPL FLATVIVVFI HVIGALWHQY GRHDATLGRM
VPWLRVKE