| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2567 |
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| Symbol | |
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| ID | 3910358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 2947006 |
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| End bp | 2950149 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637884466 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_486181 |
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| Protein GI | 86749685 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.461697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCTCGC GCTTCTTCAT CGAACGGCCG GTGCTCTCCA ACACGCTGGC GTTTCTGATC
ATCCTGTTGG GCGCGCTGTC GCTGATGCGG CTGCCGGTGT CGCAATATCC AGACGTGGTG
CCGCCGACGG TGTCGGTGAC GGCGACCTAT CCGGGCGCCA GCGCCCGCAC GGTGATGGAT
TCGGTGGCGC TGCCAATCGA GCAGCAGGTC AACGGCGTCG AAGGCATGAT CTACATGCAG
TCGACCAGCG CCAGTGACGG CAGTTACAGC CTCGTCGTCA CCTTCGACAT CGGCACCAAT
CCCGACATGG CGCAGGTGCT GGTGCAGAAC CGCGTCTCGC TGGCGAGCGC GCAATTGCCC
ACCTCGGTGT CGACGCAGGG CCTCAACGTC AAGAAGAAGT CGACCGCGAT CCTGCAATTC
GTCAGCCTGT ATGCGTCGGA CGGAAAGTAC GACAATCTGT TCCTGGCCAA TTACGCCAAG
ATCAACCTCG AGAACGAGCT GGCCCGGCTG CCCGGGGTCG GCGACGTTTC GGTGCTCGGC
TCCGGGTCCT ATGCGATGCG GATCTGGCTC GATCCGGATC GCCTGCAGAG CTACGGCCTG
ACCCCGAGCG ACGTCGTGTC CGCGATCCGG CTGCAGAGCA GCGAGGTCAC CGCCGGTCTG
GTCGGCGGGC CGCCGACGCC CGACATGGTG AACTTCCAAT ACGCGCTCGA CGTCACCGGC
CGCTTCAACG AGGCCGCCGA TTTCGAAAAG ATCGTCGTCA AGGCGGTCGA CGAAGGCGGC
GGCAACCTCG TGCGCATCGG CGATATCGGC CGCGTCGAAC TGGGCGCCGC CTCCTACGGG
CAGACCGCCA CGCTCGACGG CAAACCGTCC GCCGCGATCG CGATCTCGCT GTTGTCGGGC
GCCAACGCGC TGACGGTCGC GCAATCGGTC AATGCCAAGA TGGCGGAGAT GGCGAAATCC
TTCCCGGCCG GGCTGGACTA CAAGGTATCG TTCGACAGCA CCAAATTCAT CACCGCCTCG
GTCGACGAAG TCTACGAGAC CCTGGTCATC GCCGCCGTGC TGGTGCTGGT GGTGATCCTG
CTGTTCCTGC AGGACTGGCG GGCGATGCTG GTGCCAGCCA CCACCGTGCC GGTCACCATC
ATCGGCGCCT TCGCGGCGAT GTCGATGATG GGCTTCACCG TCAACACCAC CAGCCTGTTC
GCGCTGGTGC TGGCGATCGG CATCGTGGTC GACGACGCCA TCGTCATCGT CGAAGGCGTC
GCCCGGCACA TCGCCGGCGG GATGTCGAGC CGCGACGCGG CTGTCAAGGC GATGTCGGAA
CTGTTCGGTC CGATCATCGG CATCACCCTG GTGCTGCTGG CGGTGTTCCT GCCGGCCGCG
GCGCTGCCTG GGCTGACCGG CAAGATGTAT CAGCAGTTCG CGCTGGTGAT CGCCGCGACC
GCGCTGATTT CGGCGGTCAA CGCGGTGACG CTGAAGCCGA CGCAATGCGC GCTGTGGCTG
CGCGCGCCGG TTCCGCCCGA ACAGCGCGCT TTCGTCTATC GCGCCTTCAA CGCGGTCTAT
GCACGCTGCG AGACCGCCTA TGCGGCGCTG ATCCGCAGGC TGGTCGCCTT CAGCATCCCC
ACGACGCTAG TCGGGCTCGC TTTGATCGGC GTCGCCTTCT ACGGCCTGTC GCGGGTGCCG
ACGAGCTTCC TGCCGTCGGA GGATCAGGGC TATTTCATCG TCAGCCTGAA GCTGCCCGAT
GCCGCCTCGG CGCGGCGCAC CGAAGCGGCG GTCGCCAAGG CGGTGGACAT CGTCCGGCAA
ACCGCGGGCG TCGAAAGCGT GATCGGGGTG TCGGGCATCT CGCCGCTCGA CAACAACGCC
ACGCTGTACA ATGCCGGCAT GCTCTATGTC GTGCTGCACG ACTGGGACCA GCGCAAATCC
GCGGACCTCG GCATCGATGC GATCGTCGCC AAGGTGCGTC AGGCGCTGCA GACCATCGAC
ACCGCAACGG CGATCGTGCT GATGCCGCCG CCGATCCAGG GCGTCGGCAA TTCCAGCGGC
TTCACCATGA TGGTGGAGAT GAAGAACGGC AGCTCCGACT TCCTGGCGCT GCAGAACGCC
GCCGAACAGC TCGCTGCCAA CGCCTCGACC CAGACCAGCA TCGCCAACGC CGCCTCGACC
TTCAAGGGCA ACGTCAAGCA GTTGCGGCTG GTGGTCGACC GGATCAAGGC GGAGACGCTG
GGCGTCACCG TCGGCCAGGT GTTCTCGGCG GTGGAGAGCT ATCTCGGCTC GACCTACGTC
AATCAGTTCA CCAAGTTCAA CAACGTCTTC CAGGTCTATG TGCAGGCCGA TGCGCCGTTC
CGGCTGCAGC CCGCCGACGT GTTGAAGCTG AAGGTCAAGG GCACCGGCGG GCAGATGGTG
CCGCTCGGCG CCGTCGCATA TCTCACCGAT GACGTCGGGC CGCCGCTGGT GACACTGTAC
AACCTCTATC CCGCCGCCAC GATCGTCGGC AGCCCGGCGT CGGGCTTCAG TTCGGGCGAA
GCGATGACGC TGATGAGCGA GGTCGCCGCC CATTCTCTGC CGTCGTCGAT GGGCACCGCC
TGGACCGGGA TGTCGTATCA GGAGCAGGTC GTCGGCAATC AGATCTACTA CGTGTTCGCC
GTCGCTTTGC TGCTGGTGTA TTTCGTGCTC GCGGGCCAAT ACGAGAGCTG GCTGCAGCCG
CTCGCGGTGA TCCTCGCGGT GCCGCTGACG CTGCTCGGCA CCGTGGCGGC GCTGGAGCTG
TCGGGGCTGC CGAACGACCT CTACACCCAG ATCGGCATCG TGCTGCTGAT CGCGCTCGCC
GCCAAGAACG CGATCCTGAT CGTGGAATAT GCCCGCGAAA AATGCGCCGA GGGCATGCCG
GCCGCGGAAG CCGCGGTCGA GGCGGCGCGG CTGCGCTTCC GCCCGATCCT GATGACCTCG
TTCGCCTTCA TCTTCGGGAT GCTACCGCTG GCCTTCGCCT CCGGCGCAGG CGCCGGCGCA
CGGACCTCGC TCGGCATCGC CGTGGTCGCC GGCATGCTGG CGTCCACCGG CCTCGCCGTG
CTGTTCGTGC CGGCGTTCTT CACGGTGCTG GAGCGGCTCG GATCGCGCCG GACCGTCGAG
CCCGAGGCGC CACCGGCCGG TTGA
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| Protein sequence | MFSRFFIERP VLSNTLAFLI ILLGALSLMR LPVSQYPDVV PPTVSVTATY PGASARTVMD
SVALPIEQQV NGVEGMIYMQ STSASDGSYS LVVTFDIGTN PDMAQVLVQN RVSLASAQLP
TSVSTQGLNV KKKSTAILQF VSLYASDGKY DNLFLANYAK INLENELARL PGVGDVSVLG
SGSYAMRIWL DPDRLQSYGL TPSDVVSAIR LQSSEVTAGL VGGPPTPDMV NFQYALDVTG
RFNEAADFEK IVVKAVDEGG GNLVRIGDIG RVELGAASYG QTATLDGKPS AAIAISLLSG
ANALTVAQSV NAKMAEMAKS FPAGLDYKVS FDSTKFITAS VDEVYETLVI AAVLVLVVIL
LFLQDWRAML VPATTVPVTI IGAFAAMSMM GFTVNTTSLF ALVLAIGIVV DDAIVIVEGV
ARHIAGGMSS RDAAVKAMSE LFGPIIGITL VLLAVFLPAA ALPGLTGKMY QQFALVIAAT
ALISAVNAVT LKPTQCALWL RAPVPPEQRA FVYRAFNAVY ARCETAYAAL IRRLVAFSIP
TTLVGLALIG VAFYGLSRVP TSFLPSEDQG YFIVSLKLPD AASARRTEAA VAKAVDIVRQ
TAGVESVIGV SGISPLDNNA TLYNAGMLYV VLHDWDQRKS ADLGIDAIVA KVRQALQTID
TATAIVLMPP PIQGVGNSSG FTMMVEMKNG SSDFLALQNA AEQLAANAST QTSIANAAST
FKGNVKQLRL VVDRIKAETL GVTVGQVFSA VESYLGSTYV NQFTKFNNVF QVYVQADAPF
RLQPADVLKL KVKGTGGQMV PLGAVAYLTD DVGPPLVTLY NLYPAATIVG SPASGFSSGE
AMTLMSEVAA HSLPSSMGTA WTGMSYQEQV VGNQIYYVFA VALLLVYFVL AGQYESWLQP
LAVILAVPLT LLGTVAALEL SGLPNDLYTQ IGIVLLIALA AKNAILIVEY AREKCAEGMP
AAEAAVEAAR LRFRPILMTS FAFIFGMLPL AFASGAGAGA RTSLGIAVVA GMLASTGLAV
LFVPAFFTVL ERLGSRRTVE PEAPPAG
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