| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2543 |
|---|
| Symbol | |
|---|
| ID | 3910332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2912490 |
|---|
| End bp | 2914745 |
|---|
| Gene Length | 2256 bp |
|---|
| Protein Length | 751 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637884441 |
|---|
| Product | DEAD/DEAH box helicase |
|---|
| Protein accession | YP_486158 |
|---|
| Protein GI | 86749662 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCAC CAAGCTTCGC CTCCCTTGAG GGAGCCTACG ATCGCCTGCA TCCGAAGGTC
CGGCGTTGGA TCCGGGATCA GGGCTGGAAT GAGCTGCGCG AGATCCAGGC GCGCGCCATT
GTGGCCGCGC TCGATGGCGC CGGCGACATC CTGATCGCCG CGTCGACCGC CGCCGGCAAG
ACCGAGGCGG CATTCCTGCC GATTCTGACC GCGGTGGCGG ACCGAACGCA GTCGGGGTTC
TCGGTGCTCT ACGTCAGCCC GCTGAAGGCG CTGATCAATG ATCAATTCCG CCGGCTCGAG
ACGCTCTGCG AGGCCATGGA AATCCCCGTG GTGAAGTGGC ACGGCGATGC CTCGCCATCC
GCGAAGAGGA AGGCGATCGA CAAACCGGAG GGCGTCGCAC TGATCACGCC GGAATCGATC
GAGGCTATGT TCACCCGAAG GCCGGCCGAC GCAAAGCGGT TGCTCGCCGC GGCGGACTTC
ATCGTCGTCG ACGAGGTGCA CTCTTTCCTG CAGGGTCCGC GCGGCCTTCA CGTGGCCAGC
CTGCTCAAGC GGATCGACGC GATGGCGCCG ACCAGTGCGA GGCGGGTGGG ACTGTCGGCA
ACTATAGGTG ATCTGCGGCA GGCGGCCGCC TGGTTGAGAC CCGTCGATCC GGACCGGGTC
GACATCCTGC AGGCCAAGTC GGACGCGCCC GAGCTGCGTC TGCAGGTGAG AGGCTATTCG
GAGCCGCCGG ACCTCGACGA TCCGGACCAC GCCGAAGGGG TTGCGGAGGC GGACGAAGAG
CCGGCGTCGG ATGCGCTCCC GCAGCGCATC GCCCTCGACT ACATCGCCGA CCACCTCTTC
GGCACATTGC GCGGCTCCAA CAACCTGGTC TTCGGCGGCT CGCGCCGTAC GGTAGAGTCG
GCGGCCGACC GGCTGCGCCG CCGCTGCGAG AAGGCGAACG TCCCGAACGA GTTTTTCCCG
CACCATGGCA GCCTGTCGAA GGTGCTGCGC GAGGAGCTGG AGATCCGGCT GAAGGACGGG
AAGCTTCCGA CCACGGCCGT GTGCACGTCG ACGCTCGAGC TTGGGGTGGA CATTGGATCG
GTGAAGTCGG TGGCCCAGAT CGGGGCACCG CGTGCCTTGG CATCCGTGCG CCAGCGGCTG
GGTCGGACGG GCCGCCGCGC CGGCACCCCG GCCATCCTCC GGATCTATGT GCGCGAACCG
TACATCAGCC GGAAATCAGG TCTTCTGGAC CGACTCCACA TGAACACCGT GCGCTCGGTC
GCGATCGTTC GGCTGCTGCT GGCGGGCTTC GTCGAGCCGG CGGCGCCAAG CCCCGAGATT
CCGTCGACGC TCATCCACCA GATCCTTTCC GTGATCGCGG AGCGGGGTGG CATTTCGCCC
AAGCCGCTCT TCGATCTCCT GTGCGGACCG GGGCCATTCG CGTCGATCGG TACATCGGAC
TTCGCGGGCC TGCTGCGCCA CCTCGGTTCG ACGGACATTC GCTTTCTCGA ACAGGCACCG
GACGGCACAC TGATGCTCGG CTCTGAAGGC GAGAAGATCG TCCAGTCGCG AAGCTTCTTC
GCGGTCTTCG AGACACCCGA GGAATGGCGC CTCACGGTCG GCGGCCGCAC CTTGGGGACT
TTGCCGATCT CGTATCCCGT GAACATCGGC AGCCTCGTCG TATTCGCCGG GCAGCGGTGG
ATCGTACGCG AGATCGACGA AAAGACCCGA ACACTCTTGG TAGCTCCGCA TCGCGGAGGT
GTCGTTCCTC GGTTCGAACG GAATACTTTC GAACCTGCAC ACGATCGGCT GATTGCCGAG
ATGAAGGCGG TCTACGAAGA CGACGATGTG CCGCCCTATC TCGACCAGAG CGGAAGGGAC
CTGCTGTCGG CGGGCCGGGA GACCTTCCGC GACTGGGATC TCGACATTAC GACCCAGGTG
CAGGAGGAAG CCGATCTGCA CCTGTTTCTC TGGCGAGGCA CGCAGGCGAC GGCCGTCTTC
GGCGCCGCGT TGTCGATGGC GGGACTCGAA TGCGAGGTCC ACGATCTCGG TCTGATCCTT
CCGAAGACGA AAGGAGAGGA GGTGAATCCG ATCCTCGAAA AGCTCGCCGC CATGGAGAAG
ATCGACCCGA TGGACGTCGC CGAGTTCGTC AAGAATATCG GTGGGGGGAA GTTTCGGGAG
TCCGTGCCGG CACCGCTCGC GCGGAAGCAA TGGGCCGATC AGAACGCTCC GTTGATCAGG
ACGGCGCAGA CGATGGCGAG AACGGTGTTG ATGTGA
|
|---|
| Protein sequence | MSSPSFASLE GAYDRLHPKV RRWIRDQGWN ELREIQARAI VAALDGAGDI LIAASTAAGK
TEAAFLPILT AVADRTQSGF SVLYVSPLKA LINDQFRRLE TLCEAMEIPV VKWHGDASPS
AKRKAIDKPE GVALITPESI EAMFTRRPAD AKRLLAAADF IVVDEVHSFL QGPRGLHVAS
LLKRIDAMAP TSARRVGLSA TIGDLRQAAA WLRPVDPDRV DILQAKSDAP ELRLQVRGYS
EPPDLDDPDH AEGVAEADEE PASDALPQRI ALDYIADHLF GTLRGSNNLV FGGSRRTVES
AADRLRRRCE KANVPNEFFP HHGSLSKVLR EELEIRLKDG KLPTTAVCTS TLELGVDIGS
VKSVAQIGAP RALASVRQRL GRTGRRAGTP AILRIYVREP YISRKSGLLD RLHMNTVRSV
AIVRLLLAGF VEPAAPSPEI PSTLIHQILS VIAERGGISP KPLFDLLCGP GPFASIGTSD
FAGLLRHLGS TDIRFLEQAP DGTLMLGSEG EKIVQSRSFF AVFETPEEWR LTVGGRTLGT
LPISYPVNIG SLVVFAGQRW IVREIDEKTR TLLVAPHRGG VVPRFERNTF EPAHDRLIAE
MKAVYEDDDV PPYLDQSGRD LLSAGRETFR DWDLDITTQV QEEADLHLFL WRGTQATAVF
GAALSMAGLE CEVHDLGLIL PKTKGEEVNP ILEKLAAMEK IDPMDVAEFV KNIGGGKFRE
SVPAPLARKQ WADQNAPLIR TAQTMARTVL M
|
|---|
| |