| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2360 |
|---|
| Symbol | |
|---|
| ID | 3909358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2714499 |
|---|
| End bp | 2715440 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637884257 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_485976 |
|---|
| Protein GI | 86749480 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.701842 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.29141 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGAAG ACCCTGCTGC CTCGGTGTCG TCGGACGAGG TTCGCTTACG GCTGTATGAT
CAGGCCCTGA ATGCCGCTCG CATCGGCGTC TGGGAATGTG ACATCGAGAC CGAGCGTCTG
AGCTGGACCT CGGGCGTCTA CGAGATCTTC GGCTATCCGA TGGCCAACCC GCTGCGGCGC
GCCAACATCG TCGACCTCTA CATCGATGAA TCGCGGCGGA ACATGGAACT CGCGCGTGCC
GAGGTGATCC GGAGCGGGCG CCCGGTCTCG CTCGACGCCG AGATCAGAAC CTGGCGCGGC
GAAAGGCGCT GGATGCGCCT GTGGATCAAC GCGATGCGGG AGGGCGAGCG GCCGGCGCGG
ATCTTCGGCT GCAAACAGGA CGTCACCTCC GACCGACACG TGATCGAGAG CCTCCGGCAG
CAGGCCGAAA CCGATCCGCT CACCGGGCTC GCCAATCGGA CCATTTTCCA GGTGCGCTAT
CGCGAGGTCG TGGACGACAG CCTGAATCAC GGCTTCGCGT CGGCGCTCGT GCTGATCGAC
CTCGATGGCT TCAAGGATCT CAACGATACG CACGGCCATC TGGCCGGAGA CGCCTGCCTG
TGCGAGGTCG CGCAGCGGCT GCGGCGGGCG TTCCACAATG CCGGCCTGGT CGGCCGGCTC
GGCGGCGACG AATTCGCCAT CATCCTGCGG GCGCCGACAG CTCCCGCGCG GATCGCCGAG
GTGCTGCAGC AGACCCTCGT GATGTTGAGC CGACCGATGT TCTGGAACGG TCTTCGCATC
GAGGTCAGCG CCTCGATCGG CGCGGCTCTG GTCGGCCGAC CGCATCGGCG GCGGATCGCC
GACCTGTTCG CGGAAGCCGA TGTCGCGCTG TACCGGGCCA AGGCCGCCGG CCGCAACCGG
GTCCATCTGG TCGGCGACGA CGCGCAAAGC CGGGCGGCTT AG
|
|---|
| Protein sequence | MREDPAASVS SDEVRLRLYD QALNAARIGV WECDIETERL SWTSGVYEIF GYPMANPLRR
ANIVDLYIDE SRRNMELARA EVIRSGRPVS LDAEIRTWRG ERRWMRLWIN AMREGERPAR
IFGCKQDVTS DRHVIESLRQ QAETDPLTGL ANRTIFQVRY REVVDDSLNH GFASALVLID
LDGFKDLNDT HGHLAGDACL CEVAQRLRRA FHNAGLVGRL GGDEFAIILR APTAPARIAE
VLQQTLVMLS RPMFWNGLRI EVSASIGAAL VGRPHRRRIA DLFAEADVAL YRAKAAGRNR
VHLVGDDAQS RAA
|
|---|
| |