| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2241 |
|---|
| Symbol | |
|---|
| ID | 3909024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2568705 |
|---|
| End bp | 2570279 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637884136 |
|---|
| Product | Type I secretion outer membrane protein, TolC |
|---|
| Protein accession | YP_485857 |
|---|
| Protein GI | 86749361 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.417493 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAA GCGCTCAGAT TGCCATTTTT GCAACCGTCG TCGGGCTGGT TTCGAGCCCC
GCCGCTCTTG CGGCGGAGCC GTTCACGATT TTGGACGCCA TCAACCAGGC GGTGAAAACC
AACCCCGGCG TCGGCGAGGC GGCAGCCAAC CGTCGCGCGA CGGAGGCCGA GTTGCGGCAG
AGTCAGGGGA CCTTGCTACC GCAGGTTCGG CTCGAAGCCA GCGCTGGCCC GGAGATGCTG
AAGCAATACG TGTCTCCAGC GCCGCTCAAC AACGACGTCT ATCTGCGCGG ACGTCAGGCC
GGTGTCGTGG TTCGGCAGCT GCTGTTCGAT GGGTTTGCCT CGATCAACGA AGTCTGGCGG
CAGGCGGCTC GCGTCGACGC CGCGGCGTTC CGGGTGTTGG AGCGCACCGA ACTGATCGGG
CTCGATGCCG CCGAAGCTTA TATCGATGTG GCGCGCTACA CGCGGCTGGT TGGACTCGCC
GAACAGAATC TCAAGGTCCA TCTCGAATTG CGCAAGAACG TGTTGGCGCG CTTCGAGGGT
GGTCGGGCCG GCGAGGGCGA CACGCAGCAA GCGGAAGAAC GCGTCGCTGC AGCGCAGGCC
GTGGCGGCGG AGTTCCATCT CAGCCTCGAG ACGGCGCGCG CCAAGTTCCG CAAGGTCGTC
GGCCTCGAGC CGTACAATCT GCGCTTCCCC GGCCGTCTCG CGGATCTGCC TAAGAACAAG
GCCGCATCGC TCGACATCGC CTACAAGTTC AATCCGACGC TGCGCGCCGC GGGCGCCGAC
GTGGTCGCGG CCAAGCGCGG CTTCGATGCC ACAACCGGCG CGTTCCTTCC GACGCTGTCG
CTGGAAGGCC GCGCCTCGCG CGGCAAGGAG TCGATCCTCT ACAACAATCA GTACGACCAG
GTCAGCGGCA AGCTGGTGGC GTCCTGGGAT ATCTTCAACG GCGGCCAGAG CAGCTGGAAG
CGTGAAGAAG CTGCACAGCG GATGATCGAG GAGCAGCAGC GTCAGGCTCG GCTGCAGCGC
GATGCGCTGG AATCGATCGA CAAGGCCTGG GCCGCGCGGA CCATCACCAA CGACCGCGTC
GCAGCGCTCG TTCGCGACGT CGAGGCCGCG CGCCGGACCT TCATCGCCTA CAATAAGGAA
TACGAGCTCG GCCAGCGCAC GCTGATCGAT CTGCTCAACT CGCAGAACCA GTATTTCAAC
GCCAATGTGT CGCTGGTTTC GGCGCGCGGA GTTGCGGTGT TCGCCGACTA TCAGCTTCTC
GCCACGATGG GGCAGATGCT GAACTATCTG AAGACCGGTC ATCCGCCGGA GACCGAGTTG
GTCGACGTGC ATCCGAGCGG GTTCATCGGC TACAAGCTCG CGCCCATCCG GCTTGCGCCC
CCGTCGCCCG GTCCGGAACC GCTCAGCACT GTGCCGCCGG TGCCGCTGTT CGGGTTCTTT
TTCAACGGCC CGCCGAAATT GCCGACCGTG ATCAATTTCG ACGATCGCTG GGCGTCTCAT
GAGGTCGCCG AGAGTAGCGC GCTGTTCGTT GCAGCCGGAA CCTACGGTCG CAGCGCGCAG
GCCGGCGCCA AGTAA
|
|---|
| Protein sequence | MLKSAQIAIF ATVVGLVSSP AALAAEPFTI LDAINQAVKT NPGVGEAAAN RRATEAELRQ
SQGTLLPQVR LEASAGPEML KQYVSPAPLN NDVYLRGRQA GVVVRQLLFD GFASINEVWR
QAARVDAAAF RVLERTELIG LDAAEAYIDV ARYTRLVGLA EQNLKVHLEL RKNVLARFEG
GRAGEGDTQQ AEERVAAAQA VAAEFHLSLE TARAKFRKVV GLEPYNLRFP GRLADLPKNK
AASLDIAYKF NPTLRAAGAD VVAAKRGFDA TTGAFLPTLS LEGRASRGKE SILYNNQYDQ
VSGKLVASWD IFNGGQSSWK REEAAQRMIE EQQRQARLQR DALESIDKAW AARTITNDRV
AALVRDVEAA RRTFIAYNKE YELGQRTLID LLNSQNQYFN ANVSLVSARG VAVFADYQLL
ATMGQMLNYL KTGHPPETEL VDVHPSGFIG YKLAPIRLAP PSPGPEPLST VPPVPLFGFF
FNGPPKLPTV INFDDRWASH EVAESSALFV AAGTYGRSAQ AGAK
|
|---|
| |