| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2110 |
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| Symbol | |
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| ID | 3908524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 2400635 |
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| End bp | 2401795 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637884003 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_485727 |
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| Protein GI | 86749231 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.417803 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0323515 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGAC GGTTCGGTCC GCTGGCGTCC ATCGCCGTCA CGTGCGCGAC TGTGATTGCA
ACTCCAGCGC GTGCCGACGA AGCGAAACTG CCGGCGACGT TGGCGTTTAC CGCCTATGAC
ACCGGTACCG CGGGCTTCAA CATCGCGGTC GCCGTCGGCA AGATGATGAA GGACAAGCTC
GCCACCGACG TGCGCGTGCT GCCGGCCGGC AACGACGTCG CCCGCCTCGC GCCGCTGCGC
GCCGGCCGCG CGCAACTGGC GTGGATGGGA TCTGGCACCT ACTTCGCGCA GGAAGGCGTG
TTTGAATTCG GCGCCAAGGA ATGGGGCCCG CAGCCGCTGC AGATCACCCT CAGCGTGGTC
GATTGCAACG GCTCGTCGCT CGGCGTCGCC AAGGACGCCG GCGTCAAGGA GATCAAGGAC
CTGCGCGGCA AGCGCGTCGG CTTCGTGGTC GGCTCGCCGG CGCTGAACCA GAACGCGCTC
GGCATCATCG CCTTCGGCGA TCTCACCCAG AAGGACGTCA AGATCGTCGA ATTCGCCAGC
TACGGCGCGA TGTGGAAAGG CCTTGTCAAC AACGACGTCG ACGCCGCCTT CGGCACCACC
ATCACCGGGC CGGCGAAGGA AGCCGAGAAC TCGCCGCGCG GGCTGATCTG GCCGCCGATG
CCGCACGCCG ACAAGGCGGC GTGGGAGCGC GTCAAGAAGG TCGCGCCGTT CTTCAATCCG
CACATGTCGA CCTGTGGCGC CGCGCATCAG CCGGGCAAGC CGATCGAACT GTCGAACTAC
CCCTACCCGA TCGCGACCGT CTATGCGACG CAGCCGGCGG ATCAGGTCCA CGCCATCACC
AAGGCGATGA TCGTGAACTA CGACGTCTAC AAGGACAGCG CCCCGGGCGC CACCGGCCTC
GCGGTGAAGA CCCAGACCAT GAAATGGGTG GTGCCGTTCC ACCCCGGCGC GGTGAAGGCG
CTGCAGGAGG CCGGGCAATG GAGCCCCGAG GATCAGGCGC ACAATGACGC CCTGATCAAG
CGCCAGGCCG TGCTCGCCGC AGCATGGAAG GACTATACCG CCTCCGCGCC GTCCGGCGAC
AAGGAGTTCG TCGACGGCTG GACGGCCGCG CGCGCCGCGG CGCTGCAGAA GGCGAAGATG
CCGAACGGAT TCGCGCAGTA G
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| Protein sequence | MIRRFGPLAS IAVTCATVIA TPARADEAKL PATLAFTAYD TGTAGFNIAV AVGKMMKDKL
ATDVRVLPAG NDVARLAPLR AGRAQLAWMG SGTYFAQEGV FEFGAKEWGP QPLQITLSVV
DCNGSSLGVA KDAGVKEIKD LRGKRVGFVV GSPALNQNAL GIIAFGDLTQ KDVKIVEFAS
YGAMWKGLVN NDVDAAFGTT ITGPAKEAEN SPRGLIWPPM PHADKAAWER VKKVAPFFNP
HMSTCGAAHQ PGKPIELSNY PYPIATVYAT QPADQVHAIT KAMIVNYDVY KDSAPGATGL
AVKTQTMKWV VPFHPGAVKA LQEAGQWSPE DQAHNDALIK RQAVLAAAWK DYTASAPSGD
KEFVDGWTAA RAAALQKAKM PNGFAQ
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