| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1859 |
|---|
| Symbol | xseA |
|---|
| ID | 3908054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2123791 |
|---|
| End bp | 2125407 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637883753 |
|---|
| Product | exodeoxyribonuclease VII large subunit |
|---|
| Protein accession | YP_485478 |
|---|
| Protein GI | 86748982 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1570] Exonuclease VII, large subunit |
|---|
| TIGRFAM ID | [TIGR00237] exodeoxyribonuclease VII, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.020819 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGAC TGCTCGCCCC CGAAACCCTC GCCAATGTCG GTGAATTCAC CGTCTCCGAG
CTGTCGCAGG CGCTGAAGCG GACGGTGGAG GACAGCTATG GGCACGTCCG GGTGCGCGGC
GAGATTTCCG GATTCCGCGG CGCGCATTCA TCCGGGCACT GCTATTTCGC CCTGAAGGAC
GAGAGCGCCA AGATCGAGGC GGTGATCTGG AAGGGCGTCG CGGGGCGGAT GCGGTTCAAG
CCGCAGGAAG GCCTCGAGGT CATCGCCACC GGCAAGCTCA CCACCTATCC CGGTTCGTCG
AAATATCAGA TCGTGATCGA GGCGCTGGAG CCCGCCGGCG TCGGCGCGCT GATGGCGCTG
ATGGAAGAGC GCAAGCGCAA GCTCGGCGCC GAAGGGCTGT TCGACGAAGC GCGCAAGCAA
TTGTTGCCGT ATCTGCCCGA GGTGATCGGC GTCGTCACCT CCCCCACCGG CGCGGTGATC
CGCGACATCC TGCATCGGCT CGAAGACCGC TTCCCGCGCC GCGTGCTGGT GTGGCCGGTG
AAGGTGCAGG GCGAAGGCTC GGCCGAACAG GTCGCCGCCG CGATCCACGG CTTCAACGCG
CTGCCCGAAG GCGGCCCGAT CCCGCGCCCC GACCTGCTGA TCGTCGCGCG CGGCGGCGGT
TCGCTGGAGG ATCTGTGGTC GTTCAACGAG GAGATCGTTG TCCGCGCCGC GGCCGAAAGC
ATGATCCCGC TGATCTCTGC GGTCGGCCAC GAAACCGACG TGACGCTGAT CGATTTCGCC
GCAGACAAGC GCGCGCCGAC GCCGACCGCC GCTGCCGAAA TGGCGGTGCC GGTCCGCGCC
GAATTGTTCG TCGAGGTGCA GAGCTACGCG CGGCGGATGA TGCTGTGCTG GTCGCGTGGC
CAGGATTCAC GCCGCAACGA ACTACGCGCT GCCGCCCGCG CGCTGCCCGC TGCGGGCGAA
CTGCTCGCGA TCCCGCGGCA GCGGCTCGAC GGCGCGGCGT CGTCCCTGCC CCGCGCGCTG
CGCGCCAACA CCCACGCCCA TCACCGCCGC TACGCCAAGG CCGCGTCGGG CATCACGCTG
AATGTGCTGC GCGCCCAGGT CAGCCACAGC GCGCAGCGGC TCGGCAGCAC CGGCGAGCGG
CTGAAGCATT GCACCCGCGC CACGCTGCGC CATCGTCGCG ACCGCTTCGA GAGTCTGGCG
ATCCGGCTGC AGGCCTCGAA GCTCGCCAAC GAGCAGGCGC AGCGGATGCG GATCGCGCGC
GAGCGCGAGC GGATGCTGCG GCTCGCCGAG CGCGCCCGGC GGGCGTGGGC GACGCTGCGC
GATCGCCAGC AGGCGCGCCT TGTTCAATCC GGCAAGCTGC TCACCGCCCT GTCGTATCGC
GGCGTGCTGG CACGCGGCTT CGCGCTGGTG CGCGACGCCG ACGGCCATGC GCTCCATGCG
GCGGCGGCGG TCAGTGCGGG GGCGCGGCTC AGCGTCGAAT TCGCCGACGG CCGCGTCGGC
GTCACCGCCG ATGGCGGCGG CGCGACGCGA CCGGACATTG CCAAGCCCGC CACGCCAGCA
GCGAAGCCGG CGCCGAAGCG GGTGTCGAAG CCGATCGATC AGGGCTCGCT GTTTTAG
|
|---|
| Protein sequence | MARLLAPETL ANVGEFTVSE LSQALKRTVE DSYGHVRVRG EISGFRGAHS SGHCYFALKD
ESAKIEAVIW KGVAGRMRFK PQEGLEVIAT GKLTTYPGSS KYQIVIEALE PAGVGALMAL
MEERKRKLGA EGLFDEARKQ LLPYLPEVIG VVTSPTGAVI RDILHRLEDR FPRRVLVWPV
KVQGEGSAEQ VAAAIHGFNA LPEGGPIPRP DLLIVARGGG SLEDLWSFNE EIVVRAAAES
MIPLISAVGH ETDVTLIDFA ADKRAPTPTA AAEMAVPVRA ELFVEVQSYA RRMMLCWSRG
QDSRRNELRA AARALPAAGE LLAIPRQRLD GAASSLPRAL RANTHAHHRR YAKAASGITL
NVLRAQVSHS AQRLGSTGER LKHCTRATLR HRRDRFESLA IRLQASKLAN EQAQRMRIAR
ERERMLRLAE RARRAWATLR DRQQARLVQS GKLLTALSYR GVLARGFALV RDADGHALHA
AAAVSAGARL SVEFADGRVG VTADGGGATR PDIAKPATPA AKPAPKRVSK PIDQGSLF
|
|---|
| |