Gene RPB_1555 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_1555 
Symbol 
ID3908754 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp1752996 
End bp1753835 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content66% 
IMG OID637883451 
ProductABC transporter related 
Protein accessionYP_485176 
Protein GI86748680 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAGACGA ACACCGAAAT TGCTAACCGC CCCGCCGCCG CCCCCGCAGT CGCCCCCCTC 
CTCAGCGTCA AGAACATCGA GGTGGTCTAT GACGACGTCA TCCTGGTGCT GCGCGGCCTC
AGCCTCGACG TGCCGAAAGG CGCGATCGTG GCGCTGCTCG GCGCCAACGG CGCCGGCAAG
TCGACGACGC TGAAGGCGAT CTCCGGCCTG TTGAAGACCG AGGACGGCGA GGTCACCCGC
GGCGAGATCC TGTTCGACGG CGAGCGGATC GACGGCACCG ATCCGGACAA GATCGTGCGC
CGCGGCATCT TTCAGGTGAT GGAGGGCCGC CGCATCGTCT CCGACATGAC CTCGCTGGAA
AACCTGCGGC TCGGCGCCTT CACCCGCAGC GACCGTAACG TCGCCGCCGA CATCGACATG
GTCTACGACT ACTTCCCGCG GCTGAAGGAG CGTACCGGGC TCGCCGGTTA TCTGAGCGGC
GGCGAGCAGC AGATGCTGGC GATCGGCCGC GCGCTGATGG CGCGGCCGAA GATGATCCTG
ATGGACGAGC CGTCGATGGG CCTGTCGCCG CTGCTGGTGA AGGAAGTGTT CTCGATCATC
AAGCAGATCA ACCGCGACCT CGGCGTCACC ATCCTGCTGG TGGAGCAGAA CGCCCGCGCC
GCGCTGTCGG TGGCCAGCCA CGGCTACATC ATGGAACAGG GCAAGGTCGT GCTCGACGGC
ACCGCCGACG AGCTGCGCGA CAACGAGGAC GTCAAGGAGT TCTACCTCGG CGGCGCCGGC
GACCAGAGGA AGAGCTTCAA GAATCTGAAG AGCTTCAAGC GACGCAAGCG CTGGCTCTAG
 
Protein sequence
MQTNTEIANR PAAAPAVAPL LSVKNIEVVY DDVILVLRGL SLDVPKGAIV ALLGANGAGK 
STTLKAISGL LKTEDGEVTR GEILFDGERI DGTDPDKIVR RGIFQVMEGR RIVSDMTSLE
NLRLGAFTRS DRNVAADIDM VYDYFPRLKE RTGLAGYLSG GEQQMLAIGR ALMARPKMIL
MDEPSMGLSP LLVKEVFSII KQINRDLGVT ILLVEQNARA ALSVASHGYI MEQGKVVLDG
TADELRDNED VKEFYLGGAG DQRKSFKNLK SFKRRKRWL