| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0548 |
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| Symbol | |
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| ID | 3909587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 615831 |
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| End bp | 619268 |
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| Gene Length | 3438 bp |
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| Protein Length | 1145 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637882436 |
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| Product | helicase |
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| Protein accession | YP_484170 |
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| Protein GI | 86747674 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.107249 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCACT CGTTCTCTGC GCCGTTTACC AATGCGCCGT TTACCAATGA CCGGGCGCCC
GGCGCCGGCG TCACCGCGGT GCTCGGCCCC ACCAATACCG GCAAGACCCA TCTGGCGATC
GAGCGGATGG TGGCGCATCC GTCCGGCCTG ATCGGCTTGC CGCTGCGGCT GCTGGCGCGG
GAGGTCTACA ACAAGATCGT CGACCGGGTC GGTCCGGACG CGGTGGCGCT GGTCACCGGC
GAGGAAAAGA TCAAGCCGCC GAAGGCGCGG TTCTGGGTGT CGACGGTCGA GGCGATGCCG
CGGGATCTCG ACGTGTCGTT TCTCGCGGTG GACGAGGTGC AGATCGCCGC CGATCTGGAG
CGCGGCCATG TCTTCACCGA TCGGCTGCTG CGCCGGCGCG GCCGCGACGA GACGCTGCTG
CTCGGCGCCG CGACGATGCG GCCGATCATC GAGCGGCTGT TGCCCGGCGC CAGCATCGTC
ACCCGGCCGC GGCTGTCGCA GCTCGAATTC GCCGGCGACC GCAAGCTGAC GCGGCAACCG
CGCCGCACCG CGATCGTGGC GTTCTCGGCC GACGAGGTCT ACGCCATCGC CGAGCTGATC
AAGCGTCAGC ACGGTGGCGC CGCGGTGGTG CTGGGCTCGC TGTCGCCGCG CACCCGCAAT
GCCCAGGTGG CGATGTTTCA GTCCGGCGAC GTCGATTATC TGGTCGCCAC CGACGCGATC
GGAATGGGGC TCAATCTCGA CGTCGACCAT GTCGCGTTCG CCTCCGACCG CAAATTCGAC
GGCTATCAGT TTCGCCGCCT CAACCCGTCC GAATTCGCCC AGATCGCCGG CCGCGCCGGC
CGCGCCACCC GCGACGGCAC TTTCGGCACC ACGGGGCGCT GCGCCCCGTT CGAGCCCGAA
CTCGTCAACG CCTTGCAGAA CCACACCTTT GATACGGTGA AGACGCTGCA ATGGCGGAAT
TCCACGCTGG ATTTCGCCTC GGTGGCCGGG CTGCAGGTGT CGCTCGCCGA GACGCCGCGA
CACGATGCGC TGACGCGCGC GCCGGTCGCC GAGGACGTTC GGGTGCTCGA TCACGCCGCC
CGCGACGCCG AGGTGCGCGA GATGGCGCAT GGCGCCGCCG CCGTGGAGCG GCTATGGGAC
GTCTGCCAGG TTCCGGACTA TCGCAAGATT GCGCCGGCGG CCCACGCCGA GCTGGTGACG
ACGCTGTACC GGTTCTTGAT GCGAAAGGGC CGGATTCCGG ATGAATGGTT CGCCGCGCAG
GTCGAGCAGG CCAACCGGAT CGACGGCGGC ATCGACACGT TGTCGGCACG GATCGCGCAG
ATCCGGACAT GGACTTTCGT CGCCAACCGG GCCGACTGGC TGGCCGATCC TGAACACTGG
CAAGGCATTT CGCGCGACAT CGAAAATAAA TTGTCAGATG CCCTCCACGA ACGCCTCACG
GAGCGTTTCG TAGATCGTCG GACCAGTGTA TTGATGCGCC GCCTGCGGGA AAACACGATG
TTGAATACGG AAATTGGTAA GACCGGCGAG GTGATCGTCG AAGGGCATGT GATCGGTCGT
CTCGACGGCT TCACATTCGC GCCCGACGCC GCCGAAGCGG GATCCGACGC GAAGGCCTTG
CAGGCGACTG CGCAGAAGGC TCTGGCCGGC GAGATCGAGT CCCGCGCCGA GAAGCTCTCC
AACGCGCCCG ACGAGCAATT CGTGCTGACG TCGGACGGCA CCGTGCGCTG GACCGGCGAC
GCGGTGGCGC GTCTGGTCGG CTCCGACGAC GTGCTGCGGC CGCGGCTGCG CATCATCGCC
GACGATCGGT TGGCCGGCGC GCCGCGCGAA GCGGTGCAGA CCCGTCTCGA CCTCTGGCTC
AAGACCCACA TCGAGAAGAT CCTCGGGCCG CTGTTCGAAC TCGGCAAGGC CGAGGACATC
ACCGGCATCG GCCGCGGCAT CGCTTTCCAG CTGATCGAAG CGCTCGGCGT GATCGAGCGC
GCCAAGATCG CCACCGAGAT GAAGGATCTG GACCAGCCGT CGCGCGCCAC CTTGCGCAAA
TACGGCGTGC GGTTCGGCGC CTATCACATC TATGTCCCGT CGCTGCTGAA GCCGGCGGCG
CGTGCGCTGG CCTCGCTGCT GTGGGCTCAG AAGCTCGACA ATGTCGATAT GTCGGCGCTG
TCCGGCGCGC AGCATCTCGC CAGCAGCGGG CGGACGTCCT TCCCCGCCGA CAAGGCGCTC
GATCGCGACG CCTATCGCGT GCTGGGCTAT CGGCTGTGCG GCGAACGCGC GGTGCGCGTC
GATATTCTCG AGCGCCTCGC CGATCTGATC CGCCCGGCGC TGGCCTGGCG CGAGGGCACC
TCGGGTGAGA AACCCGCCGG CGCGTTCGAC GGCCGCAGCT TCGTGGTGAC GCAGGCGATG
ACCTCGCTGA CCGGCTCGGC CGGCGAAGAC TTCGCCTCGA TCCTGCGCGC GCTGGGCTAC
CGGATGGAGA AGCGGCCGGC CCCGCCGCCG CAGCCCAAGG TGGCGGAAAC CGCGCCGGCT
GCAGCCGCGG CCGATGCGCC GGCTGCTGCG AGCGACACCG GCCTGTCGGC CGAGGACCAC
GCCATTCTGG CCGGCGCGAT CGCGTTCGAG CCGGCGGTGA CGGTCGAGGC CGATATCGAC
ACCGACACCG ACCAGCCGGC GGCCACCGAG GCCGCGGCGG AACCGGTCGC CGAGGCCGCC
GCCGAAGCGA CGCCCGAGCT TGCTGCACCG GCGGAGCCCG CCACCGATTC GCCGGTCGAG
ACAGCCGCCG CGGCACCGAC CACCGAAGCG AGCGCCACGG ATGCGCCGGC GGCCGAGGCC
GTTGCGTCCG AGGAGACCGC GTCCGACGAG ACCGCGCCCG TCGCCGACGT GGCCGCATCC
GACGCGCCTG CGCCCGAAGC TGCTCCGACC GAAACCACGG TCGACGCGAC ATCGGCACCG
ACGTCCGAGG TGGCAGCGCC GGCCCAGCCC GACATGGTCG AAGTCTGGCG TCCTGGAGGG
CGTTCGGACG AGCATCGGGC CCGTCCCGAT CGCAATCGTC AGCGCCATCG TCCGCAGCAG
GGCGGTCAGG CCGCCGCCCC GGCGGAAGGC GAGGCCGCCG GCGAGGCGAA GCGCGACCGT
CCCGGCGGCG GGCGCCGTGG CGACCGCAAG GGCGGCGGCG ATTTCCGCCG CGACCGTCCG
CGCGAGGGCG ACGGCGCGCC GCCTCAGGCC ACCGCCGGCG AAGGCCGCCC GCCGCGCGAG
CGCTTCAAGG GGCGCGACAA CAAATTCGGC GACAAGTTCA AAGGCGGCGG CAAGGGCGGT
CGCGATCAGG GCGCATCGCA CCGCCAGGTC GCGTCCAGTG CGCCACCCCG CGAACGCGAT
CGGCCGATCG ATCCGAACTC GCCCTTCGCC AAGCTCGCGG CGCTGAAGGA ACAGCTCACC
GCCGGCCGCA AGGAGTAA
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| Protein sequence | MPHSFSAPFT NAPFTNDRAP GAGVTAVLGP TNTGKTHLAI ERMVAHPSGL IGLPLRLLAR
EVYNKIVDRV GPDAVALVTG EEKIKPPKAR FWVSTVEAMP RDLDVSFLAV DEVQIAADLE
RGHVFTDRLL RRRGRDETLL LGAATMRPII ERLLPGASIV TRPRLSQLEF AGDRKLTRQP
RRTAIVAFSA DEVYAIAELI KRQHGGAAVV LGSLSPRTRN AQVAMFQSGD VDYLVATDAI
GMGLNLDVDH VAFASDRKFD GYQFRRLNPS EFAQIAGRAG RATRDGTFGT TGRCAPFEPE
LVNALQNHTF DTVKTLQWRN STLDFASVAG LQVSLAETPR HDALTRAPVA EDVRVLDHAA
RDAEVREMAH GAAAVERLWD VCQVPDYRKI APAAHAELVT TLYRFLMRKG RIPDEWFAAQ
VEQANRIDGG IDTLSARIAQ IRTWTFVANR ADWLADPEHW QGISRDIENK LSDALHERLT
ERFVDRRTSV LMRRLRENTM LNTEIGKTGE VIVEGHVIGR LDGFTFAPDA AEAGSDAKAL
QATAQKALAG EIESRAEKLS NAPDEQFVLT SDGTVRWTGD AVARLVGSDD VLRPRLRIIA
DDRLAGAPRE AVQTRLDLWL KTHIEKILGP LFELGKAEDI TGIGRGIAFQ LIEALGVIER
AKIATEMKDL DQPSRATLRK YGVRFGAYHI YVPSLLKPAA RALASLLWAQ KLDNVDMSAL
SGAQHLASSG RTSFPADKAL DRDAYRVLGY RLCGERAVRV DILERLADLI RPALAWREGT
SGEKPAGAFD GRSFVVTQAM TSLTGSAGED FASILRALGY RMEKRPAPPP QPKVAETAPA
AAAADAPAAA SDTGLSAEDH AILAGAIAFE PAVTVEADID TDTDQPAATE AAAEPVAEAA
AEATPELAAP AEPATDSPVE TAAAAPTTEA SATDAPAAEA VASEETASDE TAPVADVAAS
DAPAPEAAPT ETTVDATSAP TSEVAAPAQP DMVEVWRPGG RSDEHRARPD RNRQRHRPQQ
GGQAAAPAEG EAAGEAKRDR PGGGRRGDRK GGGDFRRDRP REGDGAPPQA TAGEGRPPRE
RFKGRDNKFG DKFKGGGKGG RDQGASHRQV ASSAPPRERD RPIDPNSPFA KLAALKEQLT
AGRKE
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