| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0325 |
|---|
| Symbol | sdhA |
|---|
| ID | 3908706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 369667 |
|---|
| End bp | 371490 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637882211 |
|---|
| Product | succinate dehydrogenase flavoprotein subunit |
|---|
| Protein accession | YP_483947 |
|---|
| Protein GI | 86747451 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCGA ACGGCAACGG CGCAGCGGCC GCGGGCGGCC ACGCCTATCC GATCGAAGAT
CACGTCTATG ATGTCGTCGT GGTCGGCGCC GGCGGCGCCG GCCTGCGCGC GGTGGTGGGC
TGCAGCGAAG CGGGGCTGCG CACCGCCTGC ATCACCAAGG TGTTTCCGAC CCGCTCCCAC
ACCGTGGCGG CGCAGGGCGG CATCTCGGCC TCGCTCGGCA ACATGCACAA GGACGACTGG
CGCTGGCACA TGTACGACAC CGTCAAGGGG TCGGACTGGC TCGGCGATCA GGATTCGATC
GAGTACATGG TGCGCAACGC GCCCGAGGCG GTCTACGAGC TCGAACATTG GGGCGTGCCG
TTCTCGCGCA CCGAGGACGG CAAGATCTAT CAGCGGCCGT TCGGTGGCAT GACGCTGGAC
TTCGGCAAGG GCCAGGCACA GCGCACCTGC GCGGCCGCCG ACCGCACCGG CCACGCCATG
CTGCACACGA TGTACGGCCA GGCGCTGCGT CATTCGGCCG AGTTCTACAT CGAGTTCTTC
GCCATCGACC TGATCATGGA CGACCAGGGC GTCTGCCGCG GCGTCATTGC GCTCAAGCTC
GACGACGGCA CCATCCACCG CTTCAAGGCG CAGACCACGA TCCTGGCCAC CGGCGGCTAC
GGCCGCGCCT ACGCCTCCTG CACCTCGGCG CACACCTGCA CCGGCGACGG CGGCGCGATG
GCGCTGCGCG CCGGTCTGCC GCTGCAGGAC ATGGAGTTCG TGCAGTTTCA CCCGACCGGC
ATCTACGGCT CGGGCTGCCT CGTCACCGAA GGCGCCCGCG GCGAGGGCGG CTATCTGGTG
AATTCCGAAG GCGAGCGCTT CATGGAGCGC TACGCGCCCT CCGCCAAGGA TCTCGCCTCG
CGCGACGTCG TCTCGCGCGC GATGACGATC GAAATGCGCG AAGGCCGCGG CGTCGGCAAG
AAGAAGGACC ACATCTTCCT GCACCTCGAC CATCTGGCGC CGGAAGTGCT GCACGAGCGG
CTGCCGGGCA TCTCCGAATC GGCGCGGATC TTCGCCGGCG TCGACGTCAC CCGCGAGCCG
ATCCCGATCC TGCCGACCGT GCACTACAAC ATGGGCGGCA TCCCGACCAA CTTCCACGGC
GAAGTCGTCA CCAAGAAGGA CGGCGACGAC AACGCGGTGG TGCCGGGCCT GATGGCGATC
GGCGAGGCCG CCTGCGTGTC GGTGCACGGC GCCAACCGCC TCGGCTCGAA TTCGCTGATC
GACCTCGTGG TGTTCGGCCG CGCCGCCGCC TTGCGCTGCG CCGAGAAGCT GACCCCCAAC
GGCAAGCAGC CGGAGCTGCC GGCGGATTCC GCCGACCTGT CGCTCGGCCG GCTCGACAAA
TATCGCTACG CCAAGGGCGG TACCCCGACC GCCAAGCTGC GCGAAAGCAT GCAATCGGTG
ATGCAGAACA ATTGCGCGGT GTTCCGCACC GGCGAGGTTC TGTCCGAGGG CAAGGATCTG
ATCCGCAAGG TGTATGGCGG CGTCGGCGAC GTCGGCGTGT CGGACCGTTC GCTGGTGTGG
AATTCCGATC TGGTCGAGAC GCTGGAGTTC GACAATCTGA TCATCCAGGC GGTGGTGACG
ATGAATTCCG CCGCCAACCG CACCGAAAGC CGCGGCGCCC ATGCGCGCGA GGATTTTCCG
GATCGCGACG ACACCCAGTG GATGAAGCAC ACGCTGGCGT GGATCGGCGA CGACGGCGGC
ACCACGATCG ATTACCGCCC GGTGCACGAC TACACGATGA CCAACGACGT CCAGTACATC
CCGCCGAAGC CGCGGGTGTA TTGA
|
|---|
| Protein sequence | MAANGNGAAA AGGHAYPIED HVYDVVVVGA GGAGLRAVVG CSEAGLRTAC ITKVFPTRSH
TVAAQGGISA SLGNMHKDDW RWHMYDTVKG SDWLGDQDSI EYMVRNAPEA VYELEHWGVP
FSRTEDGKIY QRPFGGMTLD FGKGQAQRTC AAADRTGHAM LHTMYGQALR HSAEFYIEFF
AIDLIMDDQG VCRGVIALKL DDGTIHRFKA QTTILATGGY GRAYASCTSA HTCTGDGGAM
ALRAGLPLQD MEFVQFHPTG IYGSGCLVTE GARGEGGYLV NSEGERFMER YAPSAKDLAS
RDVVSRAMTI EMREGRGVGK KKDHIFLHLD HLAPEVLHER LPGISESARI FAGVDVTREP
IPILPTVHYN MGGIPTNFHG EVVTKKDGDD NAVVPGLMAI GEAACVSVHG ANRLGSNSLI
DLVVFGRAAA LRCAEKLTPN GKQPELPADS ADLSLGRLDK YRYAKGGTPT AKLRESMQSV
MQNNCAVFRT GEVLSEGKDL IRKVYGGVGD VGVSDRSLVW NSDLVETLEF DNLIIQAVVT
MNSAANRTES RGAHAREDFP DRDDTQWMKH TLAWIGDDGG TTIDYRPVHD YTMTNDVQYI
PPKPRVY
|
|---|
| |