| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4796 |
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| Symbol | ligB |
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| ID | 3370346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 5685673 |
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| End bp | 5687358 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637655163 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_237861 |
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| Protein GI | 66048020 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0176642 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCCTA CCTTTCGCCT GATGACGTGC GCTATTGTGT TTGTTCTGCC CGGCCTCGGC
CATGCCAGCC AATGCCCTGA CTGGCCTGCA GCCAAGGCGC GCAGTGAGGT CACCGCCTTG
CAACAGCAGA TTGCCGAGTG GGATGACAGC TACCACCGGC AGGGCATTTC GCAAATCGCG
GACGAGCTCT ACGATCAGGC GCGGCAAAAA CTGAACCTGT GGCGCTCGTG CTTTGCCGTT
TCCACCCCCG AGTCCGATCC GCTAAAGACA GCAGTCGGCC CGTTGCCTCA TCCCGTTCCG
CACACGGGCG TCAACAAGCT GGCCGACGAA GGCAGCGTCA AGGGCTGGCT CAAGGGCCGC
AACGATCTGT GGATTCAACC CAAGGTCGAT GGCGTAGCCG TCACGCTGGT CTACGAAAAG
GGCCGGCTTG TGCAGGCGAT CAGTCGTGGT GACGGGCGCA AGGGGCAGGA CTGGACCTCG
CAGGCGCGGC TGATCAAGGC CATTGCTCAA CAACTGCCCC AGGCTGAATC CACAATCCTG
CAAGGCGAGC TGTACTGGCG GCTGGACGAT CATATTCAGG CCGCATCCGG CAGCGTCAAC
GCGCGCAGCA AGGTCGCGGG ACTGCTGGCA CGGCAGACGA TCAGCCCACA GCAGGCCGAC
GCCATCGGGC TGTTCGTCTG GGACTGGCCG AACGGGCCTG CCGATATGGC GCAACGACTC
GCGGGCCTGC AAGCCATGGG CTTTGAGGAC AGCGCGGCCT ATACGCATCC ACTGGAAAAC
TACGTCCAGG CCGCCCGATG GCGTGAGCAT TGGTATCGCA ATCCCCTGCC GTTCGCCACG
GATGGCGTGA TCCTGCGCCA GGGTCAGCGC CCACCTGCGC AGCGCTGGCA AGCCAGTGCG
CCTTACTGGA TTGCCGCCTG GAAACATCCC TACGCCCAGG CGCTGGCCGA GGTGCGCAAG
GTCAACTTCA AGATCGGCCG CAGTGGCAGG ATTACGCCGG TGCTGGAGCT GACCCCGGTG
CGCCTCGATG ATCGTACCGT CAGCCGCATC AGCACGGGCT CTCTGCAGCG CTGGCAAACA
CTGGATATCA GGCCTGGCGA TCAGATCGCG GTGAGTCTGG CCGGGCTGAC GATTCCAAGA
CTCGACGGCG TGGTGTCGCG TGCTGCCGAA CGAGCCGACA TGATCATTCC GCGAGCCGAC
GACTTTCATG AACTCAGCTG CTGGCAAGCC ACTCCGGGCT GCGAAAGTCA GTTCCGCGCC
AGACTGGCAT GGCTCAGTGG CAAGAAAGGC CTGGCGTTGC CCGGCGTTGG TCCGGGGACC
TGGAACACAC TTATCGACAA CGGCCAAATC ATGGGCTTAC TCGATTGGAT GACCCTGAAT
CATGCTGAGC TTGTTAACAT TCCCGGCTTC GCTGAACGCA GTAGCGCTAA ACTGCTCGAC
AGCCTGCAAA CCGCACGCGA ACGGCCGTTT CAGACATGGC TCAAGGCCAT CGGACTGCCG
CCCACGGGAG GCGCCAGACT GCCCGACAAC TGGCACGAGC TGGCTGGCCG CAGCGTCGAG
CAATGGCAAG CAGAGCCCGG CATCGGTCCT GGTCGTGCAG CCAGGCTCAG GGCTTTTTTT
CAGGACCCAC AGGTACAGGC ACTGAGCCAG CAATTGCAGG CACAGAGCAT TTCAGGTTTT
AAGTAG
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| Protein sequence | MLPTFRLMTC AIVFVLPGLG HASQCPDWPA AKARSEVTAL QQQIAEWDDS YHRQGISQIA
DELYDQARQK LNLWRSCFAV STPESDPLKT AVGPLPHPVP HTGVNKLADE GSVKGWLKGR
NDLWIQPKVD GVAVTLVYEK GRLVQAISRG DGRKGQDWTS QARLIKAIAQ QLPQAESTIL
QGELYWRLDD HIQAASGSVN ARSKVAGLLA RQTISPQQAD AIGLFVWDWP NGPADMAQRL
AGLQAMGFED SAAYTHPLEN YVQAARWREH WYRNPLPFAT DGVILRQGQR PPAQRWQASA
PYWIAAWKHP YAQALAEVRK VNFKIGRSGR ITPVLELTPV RLDDRTVSRI STGSLQRWQT
LDIRPGDQIA VSLAGLTIPR LDGVVSRAAE RADMIIPRAD DFHELSCWQA TPGCESQFRA
RLAWLSGKKG LALPGVGPGT WNTLIDNGQI MGLLDWMTLN HAELVNIPGF AERSSAKLLD
SLQTARERPF QTWLKAIGLP PTGGARLPDN WHELAGRSVE QWQAEPGIGP GRAARLRAFF
QDPQVQALSQ QLQAQSISGF K
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