| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4390 |
|---|
| Symbol | |
|---|
| ID | 3369930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 5251748 |
|---|
| End bp | 5252707 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637654750 |
|---|
| Product | Flp pilus assembly CpaB |
|---|
| Protein accession | YP_237458 |
|---|
| Protein GI | 66047617 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3745] Flp pilus assembly protein CpaB |
|---|
| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.752776 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTC GCATTACCCT GGTGCTTGCT GTCCTGTTTT TGTTGGGGGC GTTGATTGCC
GCGTATCTGG GGATCGCCGT CAGCAAACCA GCCGAGGCAC CTGCAGCTGT CATTCCGCCC
AGCGAACCTG TCACCACCGA AACAGCGATC CAGACGCCTC CGACGCCTCC CGTCGAGGAC
GCTTTGCGTC ACAACGTCGT GGTATTGGCC AGGGATATCC CTGCCTACAC CGCAATCACG
GCCGATGACC TGACCATCGA GCGCCTCAAG GTCGCGCCAC CCGGGAGCTT TGAAGCCATC
GACAAGATTG TCGGGCGCAG CAGCTGGCGC ACGCTGACCG CCGGGAGCTG GCTCACCGAG
AGCAGCTTCG ACACAGGCGG CACCCTGGCG CGGATGATTC GGCCACATGA GCGGGCCCTG
GCATTGCAGG TCGATGAAGT GACGGGCGCC TCCGGGCAAC TCAGCCCCGG CGACTACGTG
GATGTACTGC TTTACCTGCC TGAGGACGTG AGCAATCCGA ATCGGTCGAG CCAGGTTGTG
GTGCCTGCCC TGCGCATTCT CGGCGTTGGC GCGCTGCTCG GTCCGGACCG CAACGGCAAG
CCGGTGCAGG ACATCAACGC TGACGAACGC CTCAAACAGG AGCAGCAGCG GATCAACGCG
CGAACCGTCA CGGTCGCGGT GCCGCAAGCC CTGGTGGCGC GCCTGATGCT GGCGTCGCAA
ACCGGTGTGC TGCGTCTGGC CGTGCGCAGC GCCGACGAGG GCAACCTGCA GGATTACTGG
GCCAACGAAG CCGGCGGCCT TGACGCTGCC GAGCGACTCG ATTCAGCCAA CCGCCAACTG
GTCAGCTTCA GACAACTGAG CCTGGGGCCG GCCAGCGCGC CAATATCAGG CGCAACCCCG
CGTACGTCTC GCGCTGTCGA GGTCATACGC GGTAACCAGA TCACGCAACA AACTCCCTGA
|
|---|
| Protein sequence | MSSRITLVLA VLFLLGALIA AYLGIAVSKP AEAPAAVIPP SEPVTTETAI QTPPTPPVED
ALRHNVVVLA RDIPAYTAIT ADDLTIERLK VAPPGSFEAI DKIVGRSSWR TLTAGSWLTE
SSFDTGGTLA RMIRPHERAL ALQVDEVTGA SGQLSPGDYV DVLLYLPEDV SNPNRSSQVV
VPALRILGVG ALLGPDRNGK PVQDINADER LKQEQQRINA RTVTVAVPQA LVARLMLASQ
TGVLRLAVRS ADEGNLQDYW ANEAGGLDAA ERLDSANRQL VSFRQLSLGP ASAPISGATP
RTSRAVEVIR GNQITQQTP
|
|---|
| |