| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4032 |
|---|
| Symbol | |
|---|
| ID | 3369568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4801339 |
|---|
| End bp | 4804101 |
|---|
| Gene Length | 2763 bp |
|---|
| Protein Length | 920 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637654390 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_237100 |
|---|
| Protein GI | 66047259 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0529613 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTCA TGAGTTCGAT TGTGCACAGC AATACGCCGC TACTGGTGGT CATTGATCCG
CGTGCGCTGG TTGTGCGTAG CGTGCAGTTC TGTCGAACTG TGGCCGGGCA GCCTCTTGCC
GCGCGGGTGA CCCATCAGCG CTATGACCGG GCAGGGCGTC CGGTTGTCGG TCGTGATCCG
CGTCTGTTCA GTCGCTCGGA AACCGAAGCG CAGACCCCGG CAAACCGGGT GGTCAGGTTC
AGTCTGTCCG GAGCGGCTTT GCTGAGTGAA AGCGTCGACT CGGGTTGGCG ACTGAACCTG
ATGGGCGAGG CCGGGCAGTT GCTTGAAAGC TGCGATGGGC GAGGCACTCA GCGCTTGATG
GAATACGACA GTTCGTTGCG CCCGGTCTCT GTGACAGAGC AGGGGCTTGT CGTCGAACGC
CTGGCCTATG GTGGTGCCGA CGCCGCTGAG CATAACCAGT GCAATCAACT GATTCGCCAT
GACGATACGG CAGGCTCGCG TTTGCTGCAT GATTACGGCC TGCCTGGCGC TGCGCTGGGT
GAGGAACGGC ATTTTTTGCA AGCGCCTGAA AGTCCGGACT GGCCGCTGGG CGAAGCAGAG
CGCGATGCAT TGCTTGAGCC TGTCGGGCTG CAAACCCGCT GTGGGGTCAA TGCGCTGGGC
GAAGCGATCT GGCAGACCGA TGCCATGGGC AATACACAGG CCTTTGGCCT GACCGTCGCT
GGGCAGTTGA AAGCGGCTGA ACTGACATTG GCCGGTGCCT CACCACCGCA AACGCTGGTC
GGTGAAATTC ATTACAACGC GCTTGACCAG GTCGAGCAGG AAACGGCCGG CAATGGTGTT
GTCAGTCACT TCCAATATGA TCCGCAGGAC AGCCGGCTCG CTGCACTCAG CGCGATGGCG
GCGGATGGCG CGCTATTGCA AAAGCTGATT TACAGCTATG ACCCGGTCGG TAATGTTCTG
GTGGTCAACG ATGCGTCCCA GCCAGACCGT TATTGCAACA ACCAGCTCGT CGAGCCGATC
AGTCGCTTCG AGTACGACAC GCTGTATCAG CTGATCGAAG CCAGCGGCTG TGAAGTCAGA
AACGGTGTCA GCCATGGCCC GGCGTTGCCG GGCCTGCAAT CTCTGCCGAC GGATGACCCG
TGTCAGGTCA GCAACTACAC ACAGCGTTAC CGCTACGACG CTGCGGGTAA TCTGCTGCAA
ATGCGCCACG AGGGCGCGCA CAACTTCACC CGCAACATGC ACGTTGATCC CGACAGCAAT
CGCAGCCTGC CCGACGATGA AGGAGAAGTG GATTTCGCCA CAAGTTTCGA CGCCAACGGC
AACCTGTTGC AACTCGTGCG TGGGCAGACC ATGAGCTGGG ATGCGCGTAA TCAGTTGCAG
CACATCACCA CCGTGCAACG TGAAGACCAG CCGAACGATG AAGAGCGTTA TATCTACGAT
GGGCAGGGTC AGCGTTGTCG CAAGATCAGC ACCGCACAGG CATCAGGTCG CACACTGACC
AACGAAGTGC GCTACCTGCC GGGGCTGGAA ATCCGCACCA CAGCCGATGG CGAAACCCTT
CACGTTATTA ATACTCAGGC GGGTCGCAAC AGCGTGCGGG TGTTGCACTG GGAAGCGGGA
AAACCAGATG CTGTTGCGAA CGATCAGGTG CGTTACAGCC TGGGTGATCA TCTGGGCTCG
AGCACGCTGG AGCTTGATCA GCAAGGCGGC CTGATCAGCC AGGAAAGTTA TTATCCGTTT
GGCGGCACGG CCTGGTGGGC GGCGCGCAGT TCAGTAGAAG CCAAGTACAA AACAGTTCGT
TACTCGGGTA AAGAACGCGA TGCCAGCGGG CTTTATTATT ACGGGTTCAG GTATTACGCG
CCGTGGTTGC AAAGGTGGAT CAATCCGGAC CCGGCGGGGG ATGTGGATGG GTTGAATCTT
TATCAGTTCA TCGCAAACTC ACCTGTTAAT TACCGAGATG CATCGGGACT CGCGAAATAC
AAAACAAAAT ACGACATGAC AGAATTAGAG GTGCGTTTAA AGAGGGGGCC TATTTTGAGC
CGCGGGCTTA CGGACCTTCA AAAAAATAAT AGTGACACAG CGGGTACGTT AAGAAACGCA
ATTGATTATG CAGTGACAGC GACTGCCGAG GCGATCAAGG CACTGGAGAA CCCCGAGCTC
GCTAACGCCT CTGCGCTGGC AGATCAAATA CTGGGGGGGC AGGATTCTAA CCATGATGTG
CTATTAAACA ACGTCAGAAC CCTTCATGCC GCTGCAATCA GTTACAAAAA TGAAAATGCC
GAGCAGCTGG TGGTTGTAAA AAGCAAGGTG CCCACTGAGC TTGCTTTTGT CATGAAGGGT
GACCCTCACG AGCGAATATT TTTCACGGAA GCAGGGCTAA AAGAATCAAA AAAAGTAATG
GCCATGACGT TTATTCACGA GCTTTCACAT ATAAAGCTAA ACACTGAAGA TTTCTATTAC
TATCGAAAAG GACACACCAT AAATCCTAAT AGCCAAGACA CCTCGGAGGA AGCCTACGAA
GTCGGAGCAG GGTTGCATGA CAAAAAGCTC GCCACAACCT CTGAAAAAAA CGTTTCCAAA
AAAACGTTGC TGTCACTCGT CGGCAGCACA CACGCCAGCG ATGTCGAAAA AAAACTGCAG
ACCGATAAAA CACTCAGGAG CAACCTGCTT TTACGTAACG CAGACACCTG GGCGCTGCTC
ATATTTTCCT ATGCGCACTC TGCACTTTGG CGCCTGGATC TTAGAGAACA AGTGGGAGAG
TAA
|
|---|
| Protein sequence | MKVMSSIVHS NTPLLVVIDP RALVVRSVQF CRTVAGQPLA ARVTHQRYDR AGRPVVGRDP
RLFSRSETEA QTPANRVVRF SLSGAALLSE SVDSGWRLNL MGEAGQLLES CDGRGTQRLM
EYDSSLRPVS VTEQGLVVER LAYGGADAAE HNQCNQLIRH DDTAGSRLLH DYGLPGAALG
EERHFLQAPE SPDWPLGEAE RDALLEPVGL QTRCGVNALG EAIWQTDAMG NTQAFGLTVA
GQLKAAELTL AGASPPQTLV GEIHYNALDQ VEQETAGNGV VSHFQYDPQD SRLAALSAMA
ADGALLQKLI YSYDPVGNVL VVNDASQPDR YCNNQLVEPI SRFEYDTLYQ LIEASGCEVR
NGVSHGPALP GLQSLPTDDP CQVSNYTQRY RYDAAGNLLQ MRHEGAHNFT RNMHVDPDSN
RSLPDDEGEV DFATSFDANG NLLQLVRGQT MSWDARNQLQ HITTVQREDQ PNDEERYIYD
GQGQRCRKIS TAQASGRTLT NEVRYLPGLE IRTTADGETL HVINTQAGRN SVRVLHWEAG
KPDAVANDQV RYSLGDHLGS STLELDQQGG LISQESYYPF GGTAWWAARS SVEAKYKTVR
YSGKERDASG LYYYGFRYYA PWLQRWINPD PAGDVDGLNL YQFIANSPVN YRDASGLAKY
KTKYDMTELE VRLKRGPILS RGLTDLQKNN SDTAGTLRNA IDYAVTATAE AIKALENPEL
ANASALADQI LGGQDSNHDV LLNNVRTLHA AAISYKNENA EQLVVVKSKV PTELAFVMKG
DPHERIFFTE AGLKESKKVM AMTFIHELSH IKLNTEDFYY YRKGHTINPN SQDTSEEAYE
VGAGLHDKKL ATTSEKNVSK KTLLSLVGST HASDVEKKLQ TDKTLRSNLL LRNADTWALL
IFSYAHSALW RLDLREQVGE
|
|---|
| |