| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4008 |
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| Symbol | |
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| ID | 3369544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 4772247 |
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| End bp | 4775381 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637654366 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_237076 |
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| Protein GI | 66047235 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.507214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0226563 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAAAT TTTTTATTGA TCGACCCATT TTTGCCTGGG TTATTGCCCT CGTGATCATG
CTGGTCGGTG CGCTGTCGAT TTCCAGCCTG CCGATCAACC AGTACCCGAG CATCGCACCG
CCCGCCATCG GTATCCAGGT CACCTATCCG GGCGCGTCTG CCCAGACGGT GCAGGACACT
GTGGTTCAGG TGATCGAGCA ACAGCTCAAC GGTATCGATA ACCTGCGTTA TGTCAGCTCG
GAAAGTAACT CCGACGGCAG CATGACCATC ACTGCGACGT TCAATCAGGG CACCAACCCG
GATACGGCGC AGGTTCAGGT GCAGAACAAG CTCAACCTCG CGACCCCGCT GCTGCCACAG
GAAGTGCAGC AACAGGGTAT CCGCGTCACC AAGGCAGTGA AGAACTTCCT GATGGTGATC
GGTCTGGTGT CGGAAGACGG CAGCATGGGC AAGGAAGACC TGGCCAACTA CATTGTGTCG
AACATGCAGG ATCCGATCTC GCGGACCTCC GGTGTGGGTG ACTTCCAGGT GTTCGGTTCG
CAGTACGCCA TGCGTATCTG GCTGGACCCG GCCAAGCTGA ACAACTTCCA GCTGACCCCG
GTGGACGTGA AAGACGCGAT CACCGCGCAA AACGTTCAGG TGTCGTCCGG CCAGTTGGGC
GGCCTGCCAT CGATCAGCGG TCAGCAACTG AACGCCACGA TCATCGGCAA GACCCGTCTG
CAGACCGCCG AGCAGTTCGG CAACATCTTC CTCAAGGTCA ACACCGACGG CTCGCAGGTT
CGCCTGAAAG ACGTCGCTAC GGTCGGCCTG GGCGCAGAAA ACTACAGCAC CGACTCGCAG
TTCGACGGCA AACCGGCTTC CGGTCTGGCG ATCAAGCTCG CCACCGGCGC CAACGCGCTG
GACACCGCCA AGGCCATCCG CGCGACCGTT TCCTCGCTGG AGCCGTTCTT CCCGCCTGGC
ATGAAAGTCG TGTATCCGTA TGACACGACA CCGGTGGTCA GCGAATCGAT CAACGGTGTG
GTGCACACCC TGATCGAAGC GATCGTGCTG GTGTTCCTGG TGATGTACCT GTTCCTGCAG
AACTTCCGCG CAACCATCAT CACCACGATG ACGGTTCCGG TGGTCTTGCT GGGTACGTTC
GGCATCCTCG CGGCCTTCGG TTTCACCATC AACACCCTGA CCATGTTCGG TATGGTGCTG
GCCATCGGCT TGCTGGTGGA CGATGCGATT GTGGTGGTGG AAAACGTCGA GCGGGTCATG
GAGGAGGAAA AGCTCTCCCC GCGCGACGCC ACGATCAAAT CCATGACACA GATTCAGGGC
GCACTGGTCG GTATTGCCCT GGTGCTGTCG GCGGTTCTGT TGCCGATGGC GTTCTTCGGC
GGCTCCACCG GGGTGATCTA CAAGCAGTTC TCGATCACCA TCGTCTCGGC CATGGCCCTG
TCGGTCGTGG TTGCGCTGAT CTTCACCCCG GCGCTGTGCG CCACCATGCT CAAGCCCATC
GATCACGAGA AGCACGGGCA ACCGAAACGG GGTTTCTTCG GCTGGTTCAA CCGCACCTTC
GACCGCAGCG TTCTGAGTTA CGAGCGCGGC GTCGGCAACA TGCTCAAGCA CAAGTGGCCT
GCGTATCTGG GTTACATACT GATCTGTGCG GGCATGGTGT TCATGTTCAT GCGTATTCCG
GCTGCGTTCC TGCCGGAAGA AGACCAGGGC GTTATCTTCG CCCAGATCCA GACACCGGCC
GGCTCCTCGA CCGAGCGCAC GCAGGAAGTC ATCGATCAGA TGCGTGAGTA CCTGCTGACC
AAGGAAAGCG GCGCGGTGAA GTCGGTGTTC TCGGTAAACG GCTTCAACTT CGCGGGCCGC
GGTCAAAGCT CGGCGATTGC GTTCGTGATG CTCAAGCCGT GGGAAGAGCG TGATTCCAAC
AACAGCGTTT TCGAACTGGC CAAGCGGGCT CAAGGCTATT TCTTCAGCCT GCGCGACGCG
ATGGTGTTTG CGGTCGTCCC GCCCTCGGTA CTCGAACTGG GTAACGCCAC AGGCTTCGAC
GTCTACCTGC AGGATCAGGG CGGCGTGGGT CACGACAAGC TGATGGAAGC GCGTAACCAG
TTCCTCGGCA TGGCAGCACA GAGCAAGATT CTGGCGGGCG TGCGTCCGAA CGGTCTGAAC
GACGAACCGC AATACCAGTT GATCATCGAC GACGAGCGCG CCAGTGCATT GGGCATTACC
CTGTCGGACA TCAACAACAC CCTGTCCATC GCGTTGGGTG GCAGCTACGT CAACGACTTC
ATCGACCGTG GCCGTGTGAA GAAGGTGTAC ATCCAGGGCG ATGCAGGCGC GCGTATGACG
CCTGAAGACC TGAAGAAATG GTACGTACGC AACAGCGCGG GCGAGATGGT GCCGTTCTCG
GCCTTCGCTA GCGGCAAATG GTCCTATGGC TCGCCGAAAC TGTCACGCTA CAACGGCGTG
GCGGCAGAGG AAGTACTCGG TACTCCAGCC CCTGGCTACA GCAGCGGCGA CGCGATGAAC
GAAGTCGAGG CGCTGGCCAA GAAGCTGCCG CAAGGTATCG GCATCTCGTG GACCGGTCTG
TCCTACGAGG AACGCCTGTC CGGTTCACAG GCCCCTGCCC TGTATGCCCT GTCGCTGCTG
GTCGTGTTCC TCTGTCTGGC GGCATTGTAT GAAAGCTGGT CGATTCCGAT CGCGGTCATC
CTCGTGGTGC CACTGGGGGT TATCGGTGCA CTGATGGCAA CCAGCCTGCG CGGTCTGTCC
AACGACGTGT TCTTCCAGGT CGGGTTGCTG GTGACGGTGG GTCTGGCGGC GAAAAACGCC
ATTCTGATCG TCGAGTTCGC CAAAGAGCTT CACGAACAGG GCAAGAGCCT GGTCGACGCG
GCGATCGAGG CCTGCCGCAT GCGTCTGCGC CCGATCATCA TGACCTCCAT GGCCTTCATC
CTTGGCGTTG TGCCGCTGGC GATTTCCTCG GGCGCAGGTT CGGGTAGTCA GCATTCGATC
GGTACTGGCG TAATTGGCGG TATGATCACC GCAGTTATTC TGGCGATCTT CTGGGTGCCC
CTGTTCTTCG TAACGGTTTC AGGGCTCTTC AAGAGCAAGC AGAAACATAT TTCACACGAT
GAGGCTGGCC AATGA
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| Protein sequence | MSKFFIDRPI FAWVIALVIM LVGALSISSL PINQYPSIAP PAIGIQVTYP GASAQTVQDT
VVQVIEQQLN GIDNLRYVSS ESNSDGSMTI TATFNQGTNP DTAQVQVQNK LNLATPLLPQ
EVQQQGIRVT KAVKNFLMVI GLVSEDGSMG KEDLANYIVS NMQDPISRTS GVGDFQVFGS
QYAMRIWLDP AKLNNFQLTP VDVKDAITAQ NVQVSSGQLG GLPSISGQQL NATIIGKTRL
QTAEQFGNIF LKVNTDGSQV RLKDVATVGL GAENYSTDSQ FDGKPASGLA IKLATGANAL
DTAKAIRATV SSLEPFFPPG MKVVYPYDTT PVVSESINGV VHTLIEAIVL VFLVMYLFLQ
NFRATIITTM TVPVVLLGTF GILAAFGFTI NTLTMFGMVL AIGLLVDDAI VVVENVERVM
EEEKLSPRDA TIKSMTQIQG ALVGIALVLS AVLLPMAFFG GSTGVIYKQF SITIVSAMAL
SVVVALIFTP ALCATMLKPI DHEKHGQPKR GFFGWFNRTF DRSVLSYERG VGNMLKHKWP
AYLGYILICA GMVFMFMRIP AAFLPEEDQG VIFAQIQTPA GSSTERTQEV IDQMREYLLT
KESGAVKSVF SVNGFNFAGR GQSSAIAFVM LKPWEERDSN NSVFELAKRA QGYFFSLRDA
MVFAVVPPSV LELGNATGFD VYLQDQGGVG HDKLMEARNQ FLGMAAQSKI LAGVRPNGLN
DEPQYQLIID DERASALGIT LSDINNTLSI ALGGSYVNDF IDRGRVKKVY IQGDAGARMT
PEDLKKWYVR NSAGEMVPFS AFASGKWSYG SPKLSRYNGV AAEEVLGTPA PGYSSGDAMN
EVEALAKKLP QGIGISWTGL SYEERLSGSQ APALYALSLL VVFLCLAALY ESWSIPIAVI
LVVPLGVIGA LMATSLRGLS NDVFFQVGLL VTVGLAAKNA ILIVEFAKEL HEQGKSLVDA
AIEACRMRLR PIIMTSMAFI LGVVPLAISS GAGSGSQHSI GTGVIGGMIT AVILAIFWVP
LFFVTVSGLF KSKQKHISHD EAGQ
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