| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3742 |
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| Symbol | mnmC |
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| ID | 3369277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 4457020 |
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| End bp | 4459017 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637654100 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_236811 |
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| Protein GI | 66046970 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0063824 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCATTA CCCGCCACGC CCAGATCGAC TGGGACGAAC ACGGCAACCC GCGTTCCCGC
GACTTCTCCG ACGTGTACTT TTCCACCGAA TCCGGCCTGG AGGAAACGCG CCATGTGTTT
CTGGTGCAGA ACGACCTGCG CCGGCGCTTC ACCGAGTTGC AGGACGGCGG AAGGCTGATC
ATTGGCGAGA CCGGATTTGG CACCGGGCTG AATTTTCTCT GCGCCTGGCA GTTGTTCGAC
GAGTGCGCGC CCGCCAATGC ACGCCTGCAG TTCGTCAGCG TCGAGAAGTA CCCGTTGAGC
CACGCCGACC TGCAGCGTGC CCTGGCGTTG TGGCCCGAGC TGTCGCCGTT CGCGGGTCAA
TTGCTCGACC AGTATGTGGC TGTGCACGAA GGCTTTCAGC GTCTGGTGTT CGCCGGCGGC
CGCGTGACGC TTACATTGCT GATCGGCGAT GCACTGCAGA TGCTGCCGCA ACTGGACGGG
CAGATGGACG CCTGGTTTCT CGACGGTTTT GCGCCGGCGA AAAACCCGGA AATGTGGACT
CCGGAGCTGT TTGCCGAACT GGCGCGCCTG TCCACATCGA GCACCACGAT TGGTACGTTT
ACCAGCACCG GCTGGGTGCG CCGCTCGCTG AATGCGGCAG GTTTCAAGAT GAAGCGCGTG
CCGGGCATCG GCCACAAATG GGAAGTGCTG CGTGGCACGT TTATCGCCTG GCCAGAGGAC
GTGGCGCATC CGCCTGCCGC CAAGCCATGG TTAGCCCGCC CCGCGCCGAT TGGCGGCGAG
CGCAAAGCGC TGGTGATTGG CGCGGGTCTG GCCGGCTGTG CCACGGCGCA GAGTCTGGCG
CAACGCGGCT GGCAGGTCAG CCTGCTGGAG CGCCACGCCG CACCGGCGCA GGAAGCGTCG
GGTAATCCGC AAGGCGTGCT GTATTTGAAA CTGTCGGCGC ACGGTACCGC GCTGTCACAG
TTGATCCTCA GCGGTTTTGG CCATACGCGA AGGCTGCTTG AACGCTTGCA GCGCGGGGTC
GACTGGGACG CTTGCGGGGT GCTGCAACTG ACCTTCGATG ACAAGGAAGC GCTGCGCCAG
AAACAACTGG CCGATGCCTT CCCGGAATCA CTTCTGCACC TGCTGGACAA GCCTGCCGCC
GAAGCACAAA GCGGCGTTGC ACTGAACAGT GGCGGGCTGT TTTATCCCGA AGGCGGCTGG
GTTCATCCGC CTGCGTTGTG TCACGCACAG GCTGCGCACG CCAATATCCG CCTGATCGCT
CATCAGCAGG CGCTGGAGCT GAGACGTGTC GATGATCAGT GGCAGGTCTG GAGTGAGGAA
CAGTTGGTCG ACAGCGCTCC GGTCGTTGTG CTGGCCGGTG CAGCTGATAT CCAGCAGTTT
TCGCAGAGCG CCGATTTGCC GCTCAAGCGC ATTCGCGGGC AGATCACCCG CCTGCCACAG
ACTCAGGCCA GCACGGCATT GCGCAGCGTG GTGTGCGCCG AGGGTTATGT GGCTCCGGCG
CGTCTGGGCG AGCATACGCT CGGGGCGAGT TTTGACTTCA ACAGCACTGA TCTGACGCCA
AACCTGGCCG ATCACCTGGA CAATCTGGGG CTGTTGCGGG AGATTTCGGA AGACCTCACT
TCGCGCCTCG ATACCGCCGA TTTGTCGCCC GAGCAATTGC AGGGACGCGC GGCGTTTCGC
TGCACCAGCC CGGATTACCT GCCCATCGTC GGGCCGCTGG CCGATCGCGA GGCGTTCATG
CAAGCCTATG CCGCGCTGGG CAAGGATGCG CGTCAGGTGC CGGACATCAC CTGCCCGTGG
CTGGATGGCC TGTACGTTAA CAGCGGCCAC GGTTCGCGCG GCCTTATCAC TGCGCCGCTG
TGTGGCGAAC TGATCGCCGC CTGGCTCGAC AACGAACCAC TGCCCCTGCC ACGCAGCGTC
GCCGAGGCCT GCCACCCCAA CCGCTTTGCC CTGCGCGGGC TGATTCGCGG CAAGGGGAAA
CAGACTGTCG GGCACTGA
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| Protein sequence | MTITRHAQID WDEHGNPRSR DFSDVYFSTE SGLEETRHVF LVQNDLRRRF TELQDGGRLI
IGETGFGTGL NFLCAWQLFD ECAPANARLQ FVSVEKYPLS HADLQRALAL WPELSPFAGQ
LLDQYVAVHE GFQRLVFAGG RVTLTLLIGD ALQMLPQLDG QMDAWFLDGF APAKNPEMWT
PELFAELARL STSSTTIGTF TSTGWVRRSL NAAGFKMKRV PGIGHKWEVL RGTFIAWPED
VAHPPAAKPW LARPAPIGGE RKALVIGAGL AGCATAQSLA QRGWQVSLLE RHAAPAQEAS
GNPQGVLYLK LSAHGTALSQ LILSGFGHTR RLLERLQRGV DWDACGVLQL TFDDKEALRQ
KQLADAFPES LLHLLDKPAA EAQSGVALNS GGLFYPEGGW VHPPALCHAQ AAHANIRLIA
HQQALELRRV DDQWQVWSEE QLVDSAPVVV LAGAADIQQF SQSADLPLKR IRGQITRLPQ
TQASTALRSV VCAEGYVAPA RLGEHTLGAS FDFNSTDLTP NLADHLDNLG LLREISEDLT
SRLDTADLSP EQLQGRAAFR CTSPDYLPIV GPLADREAFM QAYAALGKDA RQVPDITCPW
LDGLYVNSGH GSRGLITAPL CGELIAAWLD NEPLPLPRSV AEACHPNRFA LRGLIRGKGK
QTVGH
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