| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3735 |
|---|
| Symbol | |
|---|
| ID | 3369270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4446990 |
|---|
| End bp | 4448555 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637654093 |
|---|
| Product | PAS |
|---|
| Protein accession | YP_236804 |
|---|
| Protein GI | 66046963 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.065462 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTCA ACATGCCTAT CACGCAGACT GAGCGGACTT TTCCGGCCTC TGAACGTCTG
ATCTCTACCA CCGACCTCAA CAGCCACATC ACTTACTGCA ACGACGCTTT CGTCACCCTG
AGCGGCTTTA CTCGCGAAGA GCTGGTCGGG CAGCCGCATA ACCTGGTGCG CCACCCGGAC
ATGCCAGCCT CGGTGTTCGC GCATATGTGG GAAACCATCA AACAGGGCAA GCCGTGGATG
GGCGTGGTCA AGAATCGCTC CAAGCAGGGC GATTACTACT GGGTCAGCGC TTATGTAACC
GCGGTGTACG AAAACGGCCG TATCGTCGGG TACGAGTCGG TGCGCTCGCT GCCGACCCGC
GATCAGGTGC GGCGTGCCGA AGCACTCTAT GCGCGGTTGC GGGCTGGCAA GGCGGCGGTG
TCCGCCAGCA GCTCGGCGGC CTATCACCTG ATTCGTCAGT TACCGATGAT TCTCTGCGCG
CTTGCGCTGG CTGTGGGTGT TTACCTGCTC GACGATTTGC CGTCGATCAT CATGATCCCG
ATTGTGATGG TCGTGTTGGG CGTTTTTCTT GAAGTACGTC AGCGCAGCAG CATCCGCAAA
ACCCTTGAGG AACACCCCAA GGCCTTCACC AGTGCACTGA TTGCGCTGAC CTACAGCGAC
AGTCGCGGCC CGCAGGCGCA GCTCGACCTG GCCATGCTCA GCGAAGAGGC GCGCCTGCAA
ACAGCCCTGA CGCGACTGGC GGATACTGGC GAAAGCGTGC GCCAGCATGC CGGTCGGTCA
GCACAATTGT CCCTGCGCCA GGCCGAGTCG CTGGATCAGC AGCGCAGCGA GGCCGATCAG
TCAGCCACGG CTATCAACCA GATGGCGGCG ACCATTCAGG AAGTCACCCA CAACGTGCAG
AACACTGCCC ATGCTGCCGA AGAGGCCGAC AAGCTGGCAC AACAGGGGCG TGGCCTGGCC
GATGAAAGCC TGTTGGCGAT TCGGCACATG GCCACCTCGG TTACCGACAT TGGCAACGCC
GTGGGGGAAC TGGCTGATGC GACTCAATCG ATCGGCAGTG TGGTCGATGT GATCACCTCG
ATCGCTCAGC AAACCAATTT GCTGGCGCTC AACGCAGCCA TCGAAGCGGC GCGTGCCGGT
GAACAGGGAC GTGGTTTTGC GGTGGTGGCC GACGAGGTAC GCTCGCTGGC GTCTCGCACG
CAGTCGTCGA CCGAGCAGAT CCAGCAAATC ATCACCTCGC TGCGCGATGG CGCCGACCGG
GCGGTAAAGA CCGCCAGCAA GGGCGAGCAG ATCTCTCAGG AGAGTGTCGC CAGCGTTGAA
GCCGTGCAGA AGGCGCTGGA TGGCATCAGC CAGTCGGTGA CCCGCATCAC CGGCATGAGC
CAGCAGATGG CGTCGGCGTC TGAAGAACAG AGCCACGTCG CGGAAACCAT CAGCCAGCAA
ATCACCCGCA TCGCGCAACT CTGCGACGAG AGCGCCAGCC AGGCGCAGCA AGGCTCGCAG
ATCAGCAGCG AGCTGGAAGA AATGGCGCAG TACCTGCACA GTCTGGCGGA ACGGTTCAGC
CGCTAG
|
|---|
| Protein sequence | MRVNMPITQT ERTFPASERL ISTTDLNSHI TYCNDAFVTL SGFTREELVG QPHNLVRHPD
MPASVFAHMW ETIKQGKPWM GVVKNRSKQG DYYWVSAYVT AVYENGRIVG YESVRSLPTR
DQVRRAEALY ARLRAGKAAV SASSSAAYHL IRQLPMILCA LALAVGVYLL DDLPSIIMIP
IVMVVLGVFL EVRQRSSIRK TLEEHPKAFT SALIALTYSD SRGPQAQLDL AMLSEEARLQ
TALTRLADTG ESVRQHAGRS AQLSLRQAES LDQQRSEADQ SATAINQMAA TIQEVTHNVQ
NTAHAAEEAD KLAQQGRGLA DESLLAIRHM ATSVTDIGNA VGELADATQS IGSVVDVITS
IAQQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRSLASRT QSSTEQIQQI ITSLRDGADR
AVKTASKGEQ ISQESVASVE AVQKALDGIS QSVTRITGMS QQMASASEEQ SHVAETISQQ
ITRIAQLCDE SASQAQQGSQ ISSELEEMAQ YLHSLAERFS R
|
|---|
| |