| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3245 |
|---|
| Symbol | ligD |
|---|
| ID | 3368772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 3886134 |
|---|
| End bp | 3888734 |
|---|
| Gene Length | 2601 bp |
|---|
| Protein Length | 866 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637653596 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_236315 |
|---|
| Protein GI | 66046474 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.833216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC CCGCCAGTGA ATACACCCGC AAGCGCAATT TCGCCATCAC CTCCGAGCCT
GCGGAGAGCA AGCGTAAGGG CAAAGGCAAG TCGCAGCCTG GCGCGCTCGG TTTCGTGATC
CAGAAGCATG ACGCACGGAA CCTGCACTAC GACTTTCGAC TGGAGCTCGA TGGCACGCTC
AAGAGCTGGG CCGTGCCCAA AGGTCCGAGC CTGGACCCCA CGCAAAAGCG TCTGGCAGTG
CATGTCGAAG ACCATCCGCT GGACTACGCC GGCTTCGAGG GCAGTATCCC GCAGGGGCAG
TACGGTGGCG GCGATGTGAT TGTCTGGGAC CGGGGTGTCT GGCAGCCGCA CGGTGATCCG
CAAAAGACCT ACGAGGAAGG CAAACTCAAG TTCACCCTGG TCGGCGAGAA ACTCAGCGGT
GACTGGGCGC TGGTGCGTAC CCGGCTCAAG GGCAGCGGCA GCAAGGAACA GTGGCTGCTG
ATCAAGGAAA AGGATGACGT CGCGCGACCT GCTGCCGAGT ACGACATCAC CCATGAGCAG
CCGCAAAGCG TGATCAGTGG AGCTCATGTC GGCAAGCAAC GCGGCACCTC GAAAAAGTCC
GGGGCCAGCG CCGCCAAAGC CAAGGCCGCG ACACCCGCCG CAGCAAAAGC GTCAATGCCC
GCTGCAAAGC CGGCGCGCAG GAAGGCGAAA TCGGCTTTCC TGGACACGCT TGCGCCGCAA
CTGGCGACGC TGGTGGAGGC GCCGCCAGCC GGTGACTGGC TGTATGAAAT CAAATTCGAT
GGCTACCGCA TGCTGACTCG TATTCAGGGC GACGATGTGC GGCTGTTTAC CCGCAACGGG
CATGACTGGA CCGAGCGGCT GCCGGAACTG GTCAAGGCGC TCAAGGGCAT GAAGCTGCGC
GACAGCTGGT TCGACGGCGA AGTGGTGGTT CTCGATGAGC AGGGGCTGCC CGACTTCCAG
GGCCTGCAGA ATGCCTTTGA CGCGGGCAAC AGCAAGGACA TTCTGTATTA CCTGTTCGAC
ATGCCGTTTC TGAGCGCGGA GGACCTGCGT GAAGTGCCGC TCGAGCAGCG TCGGGATGCC
TTGAAACAAG TTCTCGACGC ACAGAAAAGT CGCCTGTTGC GTTACTCGGA TGCCTTTCAG
GCAGGCCATC AGGACATTGT CGCGAGTGCT GCGGCAATGG GCCTGGAAGG GGTGATCGGC
AAGCGTGCCG GCAGTGCCTA CGTCAGCAAG CGCAATGCCG ACTGGATCAA GCTCAAATGT
CGCTTGCGAC AGGAATTCGT GGTCGTCGGC TATACGGCGC CGCAGGGCAG CCGATCGGCG
TTCGGGGCCT TGTTGCTTGC GGTCAATGCC GGTGAGGACG GGTTGATCTA TGCCGGGCGG
GTCGGCACCG GGTTCACTGA AGTGAGCCTT GAGCAACTGC ATAAACAGCT GAAGAAGTTG
CAGCGCAAGG ATTCACCGCT GGCCAAAAAG CTCTCCGCGT CCCAGGCGCG TGGCGTGCAG
TGGGTGGCGC CGCAACTGGT CTGCGAAGCC GAGTTCGCCC AGTGGACCCG CGAAGGCATC
GTGCGCCAGG CTGCCTTTGT CGGGCTGCGT AGCGACAAGC CCGCCAAGGA CGTGGTGCGT
GAAGACGCTC AGCCTGCCAA AGTGGCCAGC CAGCCCCCAA CCACAACGGC AGCGCCCAAG
GCACGCAAAA AGGCCGCGCA GGGAAAGGTT GATGTAGCGG GCACCGGCAT CAGTCATCCG
GACCGCGTCA TCGACAGCAA GTCCGGCACC AGCAAGATCG AACTGGCGCA GTTTTACCAG
TCCATCGCCG ACTGGATTCT GCCCTACCTG AACAAGCGTC CCGTGGCTCT GCTGCGCTGT
CCGGAGGGCA TCGACGGTGA GCAGTTTTTC CAGAAGCATG CCGAACATCT GGCGATCCCG
CACATCAGGC AACTGGATCG TGCCCTGGAC CCCGGGCATG CCGCGCTGAT GGAAATAGAT
TCGGTGCCGG CACTGGTCGG TGCTGCGCAA ATGGGCGCCA TCGAGCTGCA TACCTGGGGC
GCGACGCGTG ACAGAATCGA AACGCCGGAC CATTTCGTGC TGGACCTTGA TCCCGATCCG
GCACTGCCCT GGCGCAGCAT GATCGAGGCC ACGCAAATGG TGCTCGCCGT GCTGGAAGAA
CTGGGGCTGG AGGCTTTCCT CAAGACCAGC GGTGGCAAGG GCATGCACAT CATTGTGCCG
TTGGCGCGCC AGGCAGACTG GGACACGGTA AAGGCGTTCG CCAAGGCCAT CGCCGAGTTT
GCCAGCCGTC AGCTGCCGGA ACGCTTCACC GCCACCATGG GGCCGAAAAA CCGCGTCGGA
AAAATCTTCA TCGATTACCT GCGCAACAGC CGCGGCGGCA GCACCGTAAC CGCCTACTCA
GTACGCGCCC GGCCCGGGTT GCCGGTCTCG GTGCCGATCG CGCTGGATGA GCTGGCGGGT
CTGAAGTCGT CGGCACAGTG GGACATCACC AACCTTGAGC AGCGTTTGAA GCGGCTCAAG
GACGACCCGT GGGCCGGTTA CAGCAACCGG CGCAAAATCA CGCAGAGGAT GTGGAAGCAA
CTGGGTGCGA AACGGCCTTG A
|
|---|
| Protein sequence | MAKPASEYTR KRNFAITSEP AESKRKGKGK SQPGALGFVI QKHDARNLHY DFRLELDGTL
KSWAVPKGPS LDPTQKRLAV HVEDHPLDYA GFEGSIPQGQ YGGGDVIVWD RGVWQPHGDP
QKTYEEGKLK FTLVGEKLSG DWALVRTRLK GSGSKEQWLL IKEKDDVARP AAEYDITHEQ
PQSVISGAHV GKQRGTSKKS GASAAKAKAA TPAAAKASMP AAKPARRKAK SAFLDTLAPQ
LATLVEAPPA GDWLYEIKFD GYRMLTRIQG DDVRLFTRNG HDWTERLPEL VKALKGMKLR
DSWFDGEVVV LDEQGLPDFQ GLQNAFDAGN SKDILYYLFD MPFLSAEDLR EVPLEQRRDA
LKQVLDAQKS RLLRYSDAFQ AGHQDIVASA AAMGLEGVIG KRAGSAYVSK RNADWIKLKC
RLRQEFVVVG YTAPQGSRSA FGALLLAVNA GEDGLIYAGR VGTGFTEVSL EQLHKQLKKL
QRKDSPLAKK LSASQARGVQ WVAPQLVCEA EFAQWTREGI VRQAAFVGLR SDKPAKDVVR
EDAQPAKVAS QPPTTTAAPK ARKKAAQGKV DVAGTGISHP DRVIDSKSGT SKIELAQFYQ
SIADWILPYL NKRPVALLRC PEGIDGEQFF QKHAEHLAIP HIRQLDRALD PGHAALMEID
SVPALVGAAQ MGAIELHTWG ATRDRIETPD HFVLDLDPDP ALPWRSMIEA TQMVLAVLEE
LGLEAFLKTS GGKGMHIIVP LARQADWDTV KAFAKAIAEF ASRQLPERFT ATMGPKNRVG
KIFIDYLRNS RGGSTVTAYS VRARPGLPVS VPIALDELAG LKSSAQWDIT NLEQRLKRLK
DDPWAGYSNR RKITQRMWKQ LGAKRP
|
|---|
| |