| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3083 |
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| Symbol | |
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| ID | 3368603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3688696 |
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| End bp | 3690168 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637653427 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_236153 |
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| Protein GI | 66046312 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.536231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGATGA GTACACCGCT GTCCAAGCGT ATCCGCAACC GCCGCCGGTA TGGCCTGGCC
ATGCTGGCGA GCCTGGTTCT TTCGGGCTGC TCGTTGATAC CGGCCTATCA GCGTCCAGCG
TTGCCGGTCC CTGTCGATCA GGTGTCTGCT GTTGTCCGGG CCTCGAGTAC TTCCGCCGAC
CTGACGCTCA CTGCCGACGA AGAAGCGCTC GCTGCCGAGT TGTCGCCAAA GGGAGAGCTG
CGCGGGCTGC TGCAATCGGC TCTGGCGTTC AATCGCGATT TTCGTGTGGC GGTGCTGCGT
GTGGAGGAGG CCAGGGCAAT GCGCGGCATC ACCCGTGCCG ATCGTTTTCC GACCCTTGCT
GCAGGTGTCG AGCGCGATCG TCAGCACTTC GATAATGCGG CCGCCGACGA GCGTTATGGC
CAGGACATTT CCATCGCGTC GGTGGGCGTC TCTGACTTCG AACTGGATTT CTTCGGGCGC
GTGCGTAGCC TGTCGGAGGC GGCGCGGCAC GATTATCTGG CCAGCACCTA CGGCCAGCAG
GCGGCACGCA GTGCGCTGAT TGCGGAAGTC GCCCGCGCCT GGCTGGCCGA GCGTCTGGCC
GCCGCCGTGC AGCAGGATGC GCAGGCGGTG CACGAGGCGC GGCTGATGCT GGTCAAGGCG
GCCGAAGAGC AGCAGCGTCA AGGTGCACTT TCGCTGGACG ATCTGATGGT TCAGCGCCTC
GACACTCTGA CCGCGCAACA GCAGGTACAG GATGCGGCAA GCGATCACGC CAACGCGTGG
CAGGCCTTGT TGTTGCTTAC CGGCTATTCG ACAGCGTTGC CCGCGACTAA GCCAGATACC
CCTGAGCTGA CCGCCGCGTT GGTCGAGACG CCGGCCTGGC TGTCGAATCT GCCGTCTCAG
CGTCTGCTGG AGCGTTTTGA CATCCGCCAG CGCGAAGAAG CGCTCAAGGC CAGCAATGCC
AACATTGGTG CTGCCCGTGC GGCGTTCTTT CCGTCCATAA AACTCAGTAC CGGCGTGGGC
TTGCAGAGCG ACAGCCTGCG CACCTTGTTC AGCAACGGCA GCGGTGCCTG GCTGTTCACC
CCGCAATTGA ATCTGCCGCT GTTCGACGGC GGGCGTAATC AGGCCAACCT GGATCTTGCC
AAGGTGCGTC AGCAGATCGC GGTGGCCGAG TATGAAAAGG CCGTGCAGAA CGCCTTCCGT
GAAATGTCCG CCGTGCTGAC CCGCCGTGAG CAGGCCCTGA ACCAGATCCG CAACGAGGTC
GAGCGGGTGG CGCTGGTCCA GGAAAAAGTG CGGCGCCTGT CCTTTGAACT CAATGCGGGC
GCCGTCGAGC GCACGGCATT GCTGGTTTCC ACTCTCCGTA TTGCCGAAGC CGACGCAGCC
GCTCGCAAGT CCCTCGATGC GCTGCAGCAA AACCGCATCG ATGTGTTTCG AGTGCTGCAC
GGAGCAGAAC CGACAACCCC ACCCCAATCC TGA
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| Protein sequence | MPMSTPLSKR IRNRRRYGLA MLASLVLSGC SLIPAYQRPA LPVPVDQVSA VVRASSTSAD
LTLTADEEAL AAELSPKGEL RGLLQSALAF NRDFRVAVLR VEEARAMRGI TRADRFPTLA
AGVERDRQHF DNAAADERYG QDISIASVGV SDFELDFFGR VRSLSEAARH DYLASTYGQQ
AARSALIAEV ARAWLAERLA AAVQQDAQAV HEARLMLVKA AEEQQRQGAL SLDDLMVQRL
DTLTAQQQVQ DAASDHANAW QALLLLTGYS TALPATKPDT PELTAALVET PAWLSNLPSQ
RLLERFDIRQ REEALKASNA NIGAARAAFF PSIKLSTGVG LQSDSLRTLF SNGSGAWLFT
PQLNLPLFDG GRNQANLDLA KVRQQIAVAE YEKAVQNAFR EMSAVLTRRE QALNQIRNEV
ERVALVQEKV RRLSFELNAG AVERTALLVS TLRIAEADAA ARKSLDALQQ NRIDVFRVLH
GAEPTTPPQS
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