| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3072 |
|---|
| Symbol | |
|---|
| ID | 3368592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 3671466 |
|---|
| End bp | 3672494 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637653418 |
|---|
| Product | HMG-CoA lyase-like |
|---|
| Protein accession | YP_236144 |
|---|
| Protein GI | 66046303 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR03217] 4-hydroxy-2-oxovalerate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.357205 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACG TAAAAATTCT CGACGTTACC TTGCGTGACG GTGGTTATCG GAACAACTTC
AATTTCACAG AAGATCAGGC ACAGGTTATC ACCACTGGCC TGGCCAATGC GGGTGTGGAC
CTCTGCGAAA TTGGTTATTG CAAAGGATCC TTCGCGCCGA AAGGCGAGCA CGGTCTGACC
AGTGATGTAG GCGCAGTCTT CATTGAAAAG ATTGCACAGG CCGCTAAAGG CCGCATCGAA
CTGGCCGTCA TGGTTCATCC CAGAAACATC ACCACCGATG ACTTGGCCAT GCTCAAGGAG
CAGGGCGTTT CGATGATCCG TGTCTGTTTG AGGCGCGATC AACTGGATGA GGGGCTTGTG
ACCTTGTCGC TGGCTCGTGA TCACGGCTTT AGCGTCAGCG CCAATGTGAC GCATGTGACC
TCGCAGACGC CAGGCTCCGT GCTCGATACG GCCGTGCGCG CAGAGGGGGC CGGCGCGGAT
ATCGTTTGTT GCGCGGATTC CAATGGTCAT ATGGTGCCGA CCGATGTAGA TCGGCTGTTC
AGTCGTCTCT CAAGCCGATT GTTGGTGCCG CTGGGCTTTC ACGCGCATAA CAATCTGTCG
TTGGCGCTGG CGAATGCAGC GGCGGCTATA GAAGCCGGCG CTGAATACAT CGACACGTCC
ATATGTGGCA TGGGCAAGGG GGCCGGCAAT CTTCACCTGA GTATGCTGGT TGCCTATCTG
GAGCGTACCG GCGTCAGTCA TGGTTATGAC CTGGTGAAAG TGATTGAACT GTCGGAAGCC
ACAGCCCGCG CGATCCCGCA AAATAATATG CCCAGCCCGC TGATGGATAT CATTCTGGGC
ACTTACAACT TCCCCTATGA CAGCAGTCAA CGCATGCGCG ACACCCTCGA GCGCTTTCAG
TTGACCTCCG AGTACCGAGC GATCGAGGTC ATGTATCAGC AGGACAAGGT GGCGCGCCTT
GCGCCGCGAG CGGTGTTGTC GACCATCGCC ACCGGCTTGC CGAACGGCGC GAAGGGAGTC
GCGCTATGA
|
|---|
| Protein sequence | MADVKILDVT LRDGGYRNNF NFTEDQAQVI TTGLANAGVD LCEIGYCKGS FAPKGEHGLT
SDVGAVFIEK IAQAAKGRIE LAVMVHPRNI TTDDLAMLKE QGVSMIRVCL RRDQLDEGLV
TLSLARDHGF SVSANVTHVT SQTPGSVLDT AVRAEGAGAD IVCCADSNGH MVPTDVDRLF
SRLSSRLLVP LGFHAHNNLS LALANAAAAI EAGAEYIDTS ICGMGKGAGN LHLSMLVAYL
ERTGVSHGYD LVKVIELSEA TARAIPQNNM PSPLMDIILG TYNFPYDSSQ RMRDTLERFQ
LTSEYRAIEV MYQQDKVARL APRAVLSTIA TGLPNGAKGV AL
|
|---|
| |