| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2968 |
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| Symbol | |
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| ID | 3368488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 3557635 |
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| End bp | 3560826 |
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| Gene Length | 3192 bp |
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| Protein Length | 1063 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637653314 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_236040 |
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| Protein GI | 66046199 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.599397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.253976 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCT CCAAATTCTT TATTTCACGG CCGATCTTCG CCGCAGTGCT GTCGCTGCTG
ATCCTGATCG CCGGTGCCAT CTCGCTGTTC CAGCTACCGA TCAGCGAATA CCCGGAAGTC
GTGCCGCCAA CCGTGGTGGT GCGCGCCAAC TTCCCCGGCG CCAACCCCAA GGTGATCGGC
GAAACCGTGG CCTCGCCACT GGAACAGGCG ATTACCGGTG TCGAAGGCAT GCTCTACATG
TCCTCGCAGG CCACCGCTGA TGGCAAGCTC ACCCTCACCA TCACCTTCGC ACTGGGTACT
GACCTGGACA ACGCGCAGGT GCAGGTGCAG AACCGCGTGA CCCGCAGCGA GCCGAAGCTG
CCTGAAGAAG TGACACGCAT CGGCATCACG GTGGACAAGG CCTCCCCCGA CCTGACCATG
GTTGTGCACT TGACCTCGCC GGACAAACGC TACGACATGC TGTACCTGTC CAACTACGCC
GTGCTCAACA TCAAGGATGA GCTGGCGCGA CTGGGCGGCG TCGGTGACGT GCAACTGTTC
GGCATGGGCG ACTATTCACT GCGGGTCTGG CTTGATCCGA ACAAGACCGC CTCACGCAAC
CTGACCGCCA CTGATGTGGT CAATGCGATT CGCGAGCAGA ACCGTCAGGT AGCCGCAGGC
CAGCTGGGCT CCCCGCCCTC CCCGAATGCC ACCAGCTTTC AGATGTCGAT CAACACTCAG
GGCCGTCTGG TCAGTGAGGA AGAGTTCGAA AACGTGGTCG TGCGCGCCGG TGCCGATGGC
GAAATCACTC GCCTCAAGGA CATTGCCCGC ATCGAGCTGG GTTCCAGCCA GTACGCGTTG
CGCTCGCTGC TCAACAACCA GCCTGCGGTC GCGATCCCGA TCTTCCAGCG TCCCGGCTCC
AACGCCATCG ACATCTCCAA CGATGTACGG GCACGGATGG CCGAGCTCAA GCAAAGCTTC
CCGGAAGGCA TGGACTACAG CATCGTCTAT GACCCGACGA TCTTCGTCCG TGGCTCCATC
GAGGCGGTGA TTCACACGCT GTTCGAAGCC CTGATTCTGG TAGTGCTGGT CGTCATCCTG
TTCCTGCAGA CCTGGCGCGC GTCGATCATC CCGCTGGTGG CCGTACCGGT CTCGTTGATC
GGCACCTTTG CGGTCATGCA TATGTTCGGT TTCTCGCTGA ACGCGCTGTC CTTGTTCGGC
CTGGTACTGG CGATCGGTAT CGTGGTCGAC GATGCCATCG TGGTGGTGGA GAACGTCGAA
CGGAACATCG AACTGGGCCT GGAACCGGTC GCCGCCACGC ACAAGGCCAT GGCCGAAGTG
ACGGGGCCGA TCATCGCGAC GGCGCTGGTG CTGTGCGCCG TGTTCGTGCC TGCGGCGTTT
ATCTCCGGGC TCAGCGGGCA GTTCTATAAG CAGTTCGCGC TGACCATCGC CATCTCGACG
GTCATTTCCG CCTTCAACTC GCTGACCCTG TCGCCTGCAC TGGCGGCGGT ATTGCTCAAA
GGTCATGACG CGCCCAAGGA TCGCTTCTCG CGGTTCCTCG ACAAAATGCT CGGCAGCTGG
CTGTTCCGTC CGTTCAACCG CTTTTTCGAG AAAGCCAGCC ACGGCTATGT CGGCACGGTC
GCCAGGGTCA TTCGCAGCAG CGGTATTGCC TTGCTGGTCT ACGCGGGCCT GATGGTTTTG
ACCTGGATGG GCTTTGCCAG CACACCAACC GGTTTTGTAC CGAGCCAGGA CAAGCAATAC
CTGGTCGCAT TTGCCCAGTT GCCGGACGCC GCAAGCCTGG ACCGCACCGA GGATGTCATC
AAGCGCATGT CGGAGCTGGC CCTCAAGCAG CCTGGCGTGC AGGATGCGAT TGCCTTCCCG
GGGCTGTCGA TCAACGGCTT CACCAACAGC CCGAATAACG GCGTGGTGTT CGTGACCCTC
AAACCGTTCG ACGAACGCAA GGACCCGAGC CTCTCGGCCA ACGCGATTGC CGGTGCACTG
AACGGTCAGT TCGCTTCGAT TCAGGAAGCC TACATGGCGA TCTTCCCGCC ACCACCGGTA
CAAGGCCTGG GCACCATCGG CGGCTTCCGT CTGCAAATCG AGGACCGTGG CAACCTCGGC
TATGACGAGC TGTACAAGGA AACCCAGAAC ATCATCGCCA AAAGCCGCAG CGTGCCGGAA
CTGGCCGGAC TGTTTACCAG CTACACGGTG AACGTACCGC AAGTCGATGC CGCGATTGAC
CGCGAGAAAG CCAAGACCCA CGGCGTGGCA GTCAGCGATA TTTTCGACAC CCTGCAGGTG
TATCTGGGTT CGCTGTACGC CAACGACTTC AACCGCTTCG GCCGCACCTA TCAGGTCAAT
GTCCAGGCTG AACAGCAGTT CCGTCAGGAT GCCGATCAGA TCGGTCAGCT CAAGGTGCGC
AATAACCTGG GCGAGATGAT CCCGCTGGCA ACCTTCGTCA AGGTCAGCGA TACCGCAGGC
CCTGACCGCG TCATGCACTA CAACGGCTTC ATCACTGCTG AAATCAACGG TGCAGCGGCA
CCGGGCTACA GCTCTGGCCA GGCTCAGGCA GCAGTCGAGA AACTGCTTCG CGAGGAACTG
CCCACCGGCA TGATCTACGA ATGGACCGAC CTGACCTATC AGCAGATCCT TTCGGGCAAT
ACCGCGCTGT TCGTGTTCCC GCTCTGTGTG CTGCTGGCGT TTCTGGTGCT GGCAGCCCAA
TACGAAAGCT GGAGCCTGCC GCTGGCGGTG ATCCTGATCG TACCGATGAC CCTGCTCTCG
GCGATTGCCG GGGTAATGAT CGCTGGCAGC GACAACAACA TCTTCACTCA GATCGGCCTG
ATCGTGCTGG TAGGCCTGGC GTGCAAGAAC GCGATTCTGA TCGTCGAGTT CGCCAAGGAC
AAACAGGCCG AAGGGATGAG CCCGCTGGAT GCGGTACTGG AAGCCTGCCG CCTGCGTCTG
CGTCCGATCC TGATGACCTC GTTCGCCTTC ATCATGGGTG TCGTGCCGCT GGTGCTGTCC
AGCGGTGCAG GTGCCGAGAT GCGCCATGCC ATGGGTGTCG CGGTGTTCTC CGGGATGCTG
GGGGTCACCT TCTTCGGCCT GCTGCTGACG CCGGTGTTCT ACGTGCTTAT CCGTAATTAC
GTCGAACGCC AGGAGGCCCG CAAGGCCGCC AGGGTAAACA GCCAGCAAAA CCTGCCTGCG
GAGATGCATT GA
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| Protein sequence | MNFSKFFISR PIFAAVLSLL ILIAGAISLF QLPISEYPEV VPPTVVVRAN FPGANPKVIG
ETVASPLEQA ITGVEGMLYM SSQATADGKL TLTITFALGT DLDNAQVQVQ NRVTRSEPKL
PEEVTRIGIT VDKASPDLTM VVHLTSPDKR YDMLYLSNYA VLNIKDELAR LGGVGDVQLF
GMGDYSLRVW LDPNKTASRN LTATDVVNAI REQNRQVAAG QLGSPPSPNA TSFQMSINTQ
GRLVSEEEFE NVVVRAGADG EITRLKDIAR IELGSSQYAL RSLLNNQPAV AIPIFQRPGS
NAIDISNDVR ARMAELKQSF PEGMDYSIVY DPTIFVRGSI EAVIHTLFEA LILVVLVVIL
FLQTWRASII PLVAVPVSLI GTFAVMHMFG FSLNALSLFG LVLAIGIVVD DAIVVVENVE
RNIELGLEPV AATHKAMAEV TGPIIATALV LCAVFVPAAF ISGLSGQFYK QFALTIAIST
VISAFNSLTL SPALAAVLLK GHDAPKDRFS RFLDKMLGSW LFRPFNRFFE KASHGYVGTV
ARVIRSSGIA LLVYAGLMVL TWMGFASTPT GFVPSQDKQY LVAFAQLPDA ASLDRTEDVI
KRMSELALKQ PGVQDAIAFP GLSINGFTNS PNNGVVFVTL KPFDERKDPS LSANAIAGAL
NGQFASIQEA YMAIFPPPPV QGLGTIGGFR LQIEDRGNLG YDELYKETQN IIAKSRSVPE
LAGLFTSYTV NVPQVDAAID REKAKTHGVA VSDIFDTLQV YLGSLYANDF NRFGRTYQVN
VQAEQQFRQD ADQIGQLKVR NNLGEMIPLA TFVKVSDTAG PDRVMHYNGF ITAEINGAAA
PGYSSGQAQA AVEKLLREEL PTGMIYEWTD LTYQQILSGN TALFVFPLCV LLAFLVLAAQ
YESWSLPLAV ILIVPMTLLS AIAGVMIAGS DNNIFTQIGL IVLVGLACKN AILIVEFAKD
KQAEGMSPLD AVLEACRLRL RPILMTSFAF IMGVVPLVLS SGAGAEMRHA MGVAVFSGML
GVTFFGLLLT PVFYVLIRNY VERQEARKAA RVNSQQNLPA EMH
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