| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2967 |
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| Symbol | |
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| ID | 3368487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 3556381 |
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| End bp | 3557622 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637653313 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_236039 |
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| Protein GI | 66046198 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.400142 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.180224 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCAGA CAATCAGCCA TCTGCGCTAT CCTCTCACCG CCCTCGCCTT GATCGTCATC
AGTGCCTGCG GCCGTGCGCC GGAAGCCACC AGTGCGCCTG GCGCGGCCAA GGTCAGTGTG
GCCAAGGTAC TGGAGCAGCC AGTCAACGAG TGGGATGAAT TCACCGGTCG TCTCGAAGCA
CCTGAAACGG TCGAAGTGCG TCCAAGGGTC TCCGGCCAGA TCGATCAGGT AGCCTTCACC
GACGGCGCGC TGGTCAAGAA AGGCGATCTG CTGTTCCAGA TCGATCCTCG CCCTTTCCAG
TCGGAAGTCC GCCGCCTCGA AGCCCAGTTG CAACAGGCCC GCGCAGTTGC TTCGCGCAGT
GACAGCGAAG CGCAGCGCGG TGAGCGTCTG CGCAGCAACA ATGCGATTTC CGCCGAGCTG
GCCGAATCGC GTACCACCTC GGCGCAGGAA GCCAAGGCCG GTGTCGCGGC CATCCAGGCG
CAACTGGATC TGGCTCGACT GAACCTCAGT TTCACCCGGG TCACCGCACC GATTTCAGGC
CGCGTAAGCC GTGCCGAAAT CACCGCTGGC AACATTGTTA CCGCCGATGT CACCGCCCTG
ACCAGCGTGG TTTCCACCGA CAAGGTCTAC GCCTACTTCG ACGCAGACGA GCGCGTGTTC
CTCAAATACA CCGAACTGGC CCGCAAAGGC CAGCGCGGTC AGACCACGCC GGTGTACCTG
GGGCTGTCCA ACGAACCCGG CAACCCGCAC CTGGGCCAGA TGAACTTTGT CGACAACCAG
GTCAACCCGA GGACCGGCAC CATTCGTGGC CGCGCCGTGT TCGATAACGC CGACGGTGCG
TTTACCCCCG GCCTGTATGC ACGCCTGAAA CTGGTGGGCA GCGGCACTTA CTCGGCCGTG
CTGATCAATG ACGAAGCAGT GGGCACCGAC CTGGGCAAGA AGTTTGTGCT GGTCATGGAC
AAGGACAACA AGCCCGCTTA CCGGGCTGTC GAGCTGGGGC CGAAAATCGA AGGCCTGCGC
ATTGTGCGCA ATGGTCTGGC CAAGGATGAC ACCATCGTCG TCAAAGGCTT GCAGCGCGTT
CGTCCCGGCC AGCCTGTGGA CCCTGAAGTC ACTCCGATGG CCAGCGCCGA CACCCTCGCC
GCACTGCTCA AACAACGCCA GGCCCTCGAA GCCAGCAACC TGCCACAAGT GGCGCCCAAA
GCGGCCGTCA AAATCGCCAG CGCTGCCGCG CCGCGCGGCT AA
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| Protein sequence | MHQTISHLRY PLTALALIVI SACGRAPEAT SAPGAAKVSV AKVLEQPVNE WDEFTGRLEA
PETVEVRPRV SGQIDQVAFT DGALVKKGDL LFQIDPRPFQ SEVRRLEAQL QQARAVASRS
DSEAQRGERL RSNNAISAEL AESRTTSAQE AKAGVAAIQA QLDLARLNLS FTRVTAPISG
RVSRAEITAG NIVTADVTAL TSVVSTDKVY AYFDADERVF LKYTELARKG QRGQTTPVYL
GLSNEPGNPH LGQMNFVDNQ VNPRTGTIRG RAVFDNADGA FTPGLYARLK LVGSGTYSAV
LINDEAVGTD LGKKFVLVMD KDNKPAYRAV ELGPKIEGLR IVRNGLAKDD TIVVKGLQRV
RPGQPVDPEV TPMASADTLA ALLKQRQALE ASNLPQVAPK AAVKIASAAA PRG
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